Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1350 ATGTCGTGTTCGTCGTCATCGGGGTCGGAGGAAGGTGATGAGGGATTCGACTCTTACCGGAAAGGAGGGTACCACGCCGTCAGAGTCGCCGATCAGTTCGCCGCCGGCAGGTACATAGCGCAGAGAAAGTTGGGTTGGGGTCAGTTTTCCACCGTGTGGCTCGCTTACGATACTAAAACTGAGTCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAGTTTGCTCAGGCTGCCCTTCATGAGATTGAACTTCTTTCATCCATTGCTGACCACAATCCAACAAATTCAAAATTTGTTATTCAATTGATTGACCACTTTAAGCACACAGGTCCAAATGGGCAGCATCTTTGCATGGTCCTTGAGTTTCTTGGCGATAGCTTGCTTCGCTTGATCAGATACAACCGCTATAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGCAAATGTGTTTTGACTGGTTTGGATTACTTACATACTGATCGTGGTATGATCCACACTGACCTAAAACCTGAAAACATTCTTCTATGTTCAACCATTGATCCTGCCAAAGACCCTTTAAGGTCTGGACTTTCCCCAATTCTTGAGCGGCCTGAGGGAAACACAAATGGTGGAGTTACAAGTCTTATTGAGAAAAGGTTGAGAAGGAGAGCAAGGACAGCAGTTGCTAAGATATCTGGAAGAAGAGCATCAATGGGAGGAATAGGAGATGCTGCAAAGACTGGTAGAAATATTGATGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCTTGCTGGGCTGATAAGCAGTTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCACCTGAAGTTATACTGAAAGCTGGCTATTCCTTCTCCGTTGACATGTGGTCTTTAGCTTGCATTGCTTTTGAACTTGCCACTGGAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTTTGTCCACTTGACAAATTGCTGACTGATAAATATAAATTTTCAGTGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTACCACTCTTTGATTTTGCACCAGAGAAGCGACCGACCGCACGACAGTGCCTGCAACACCCATGGCTGAACTACATGGAATCTCCTCCAAATGAAATGAGAAATGAATCTGCTGTGGAAAAGGTAGATGTTGGGATGAGCAACCTTAAAATCAGGGTGGAAAAGTGA 1338 0.441 MSCSSSSGSEEGDEGFDSYRKGGYHAVRVADQFAAGRYIAQRKLGWGQFSTVWLAYDTKTESYVALKIQKSAAQFAQAALHEIELLSSIADHNPTNSKFVIQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYKGLPLNKVREICKCVLTGLDYLHTDRGMIHTDLKPENILLCSTIDPAKDPLRSGLSPILERPEGNTNGGVTSLIEKRLRRRARTAVAKISGRRASMGGIGDAAKTGRNIDGIDVRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILKAGYSFSVDMWSLACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIATGGAQSKDFFDRHGDLKRIRRLKFCPLDKLLTDKYKFSVNDAQEFSEFLLPLFDFAPEKRPTARQCLQHPWLNYMESPPNEMRNESAVEKVDVGMSNLKIRVEK* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1350 445 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1350 445 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1350 445 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Gso1g1350 445 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 445 - -
Gso1g1350 445 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 445 - -
Gso1g1350 445 CDD STKc_SRPK 27 413 - -
Gso1g1350 445 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Gso1g1350 445 SUPERFAMILY Protein kinase-like (PK-like) 32 422 IPR011009 -
Gso1g1350 445 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Gso1g1350 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Gso1g1350 445 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1350 445 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1350 Gso-Chr1 50148031 50152261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1350 4 414 EF-hand Containing Proteins AT5G22840 50.108 1.88e-164 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Gso1g1350 Pkinase 1.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1350 K08832 - gmx:100793851 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1350 1 50148031 50152261 Gso11g0733 11 6546360 6550663 GST