Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1347 ATGATTAAAGCTTGGCTCTTGGTTTTAATGGTTCTCTCCAATGGGTTCTTTTCAAATGGGGATGGCATGCATAATTCCACAATACCAGATTTTGTAAATATTGGGGCTCTCTTCTCTTTCAATACTAGTGTTGGTAGAAGTATAAAAATTGCTATAGAAGCTGCGGTTGAAGATGTAAATTCTGACCCTACTATTCTTGGTAAAACCAAGCTGAACCTCTCACTGCAAGAAGATTTGAAGTATAGAGGTTTCCTGAGCATTTCTGAGGTTTTGCAGGTCATGGCAAGACGCACTGTGGCAATAATAGGCCCCCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTGTCATTTTCAGCTTTGGACCCTACCCTTTCTTCACTTCAATTCCCATTCTTCATTAGAACTTGTCACAGTGATCTTTATCAAATGACTGCAATAGCAGACCTTGTTAACTACCATGATTGGAAAGATGTTATTGCTGTCTACCTTGATGATGATAATGGGAGAAATGGAATAGGCGCATTAGGCGATAAGCTTGCTGAGAGGCGTTGCAGGATATCATATAAAGCACCTTTGAGCCCTGATGCATCTATGGAAGAGATTACTAATGTGCTTGTTCAGGTAGCTCTGGCAGAATCACGGGTAATAGTTGTTCATGCAAATACTCAATTTGGCCCCAAGTTGTTTAGTGTTGCAAAGAATCTTGGGATGATGGGAACTGGGTATGTCTGGATAGCCACTGCTTTCCTCTCTGCTCTCCTTGATATCAACAGTCCCCTCTCTCCAGATTCATTGGATGACATTCAAGGAGTTCTTACACCGCGTATGTACATACCGGATTCACAGCTCAAAAGGAGGTTTGCTTCTAGGTGGAAAAACTTGACTAGTGGAAATACTGCTAATGCCCACCTTGGATTGAGCTTTTTACCTCTCTATGCTTACGACACTGTGTTTGTGCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGTAACCAAATTACATTCTCAACTGATTCAAAGCTATCTAGCTTACATGGAGACAACTTGAATCTTGAAGCCTTGAAAATCTTCAATGAAGGAAATTTGTTACGCAGTAACATCTATGAGGTTAACATGACTGGTGTATCAGGTCCATTCAAGTATACATCTGATAGAAACCTTGTTAATCCTGCATATGAAATCATTAATGTCGTTGGAACTGGAACTCGGAGGATTGGTTATTGGTCTAATTATTCTGGACTATCAGTTGTTCCTCCAGAAACTCTTTATTCCGAACCCGCCAATCTTTCCAGGGAAAATCAAAAGTTGTTCCCTCCAATTTGGCCTGGAAACACTGGTGAGAGACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTCTTAAAGATTGGTGTACCAAAAGGTGTTAGTTACAAAGAATTTGTCTCACAAATAAAAGGTACTGATATGTTTGAGGGATTCTGCATTGATGTATTTCTTGCTGCAGTGAACCTGTTGTCTTATGCTGTCCCCTATAAGTTTGTCGCATACGGGGATGGTAAGAGCAATCCTAGTATGACTGAGCTTGTCCGTATGATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTGGTGGTAGTAGCACCAGTTAGGAAGTCCGAATCCAATGCTTTGGCCTTTTTGGCCCCTTTTACCCCAAACATGTGGTGTGTCACAGCTATCTTTTTCATATTAGTGGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGGGGACCACCCAAAAAACAAGTAGTTACTGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGCCGCTTTGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCGAGTTACACGGCAAGTCTAACCTCAATCCTCACAGTGCAACAACTTTATTCGCCCATTAAAGGCATTGAAAGTTTAGTAATTGGCAAAGAGCCTATTGGGTACACACAGGGTTCTTTTGCTAGAAATTATTTAGTTCAGGAATTGAATATTGATGAGTCCAGGCTTGTTCCTCTAACAACACCAGAAGAAGCTGCTAAAGCACTGAGAAAGGGTCCAGAAAATGGGGGTGTAGCTGCTTACATTGATGAGCGTGCCTACACTGACATCTTCCTCTCCAGCCGTTGTGATTTAACTGTTATAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCACGGGACTCGCCATTAGCAGTTGACCTGTCAACTGCCATATTGCAAATGATAGATAGTGGAGATTTGCAAAGGATCCATGACAAATGGCTTTTGAGTAGCGCTTGCTTATCACAAGGTGCAAAGTTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGCCTCTATATGATCTGTGGGCTTGCCTGCTTGCTTGCACTCTTCATATATCTTATACAGATTTGGAGGCAATACCATAAGCACTACGTCTCAGAGGAACTTCATTCTACTGACGGCCAAAACATAGGATCAAAATCTTCACATCTCAAGACTTTCCTTTCATTTGTAGATGAAAAAGAAGAGACCTTTAAGAGCCGGTCCAAGAGAAGGAAAATGGAGAGGATCTCATACAGAAACAGTGAAGGAAGCTTATCCATCAGCTCCAACCAGGGATATGCTTCACGCAGAAGTGAATGTGCTAGCGAAGTATGA 2817 0.4129 MIKAWLLVLMVLSNGFFSNGDGMHNSTIPDFVNIGALFSFNTSVGRSIKIAIEAAVEDVNSDPTILGKTKLNLSLQEDLKYRGFLSISEVLQVMARRTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMTAIADLVNYHDWKDVIAVYLDDDNGRNGIGALGDKLAERRCRISYKAPLSPDASMEEITNVLVQVALAESRVIVVHANTQFGPKLFSVAKNLGMMGTGYVWIATAFLSALLDINSPLSPDSLDDIQGVLTPRMYIPDSQLKRRFASRWKNLTSGNTANAHLGLSFLPLYAYDTVFVLAHALDAFFKQGNQITFSTDSKLSSLHGDNLNLEALKIFNEGNLLRSNIYEVNMTGVSGPFKYTSDRNLVNPAYEIINVVGTGTRRIGYWSNYSGLSVVPPETLYSEPANLSRENQKLFPPIWPGNTGERPRGWVFPNNGRLLKIGVPKGVSYKEFVSQIKGTDMFEGFCIDVFLAAVNLLSYAVPYKFVAYGDGKSNPSMTELVRMITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVRKSESNALAFLAPFTPNMWCVTAIFFILVGAVVWILEHRVNDEFRGPPKKQVVTVLWFSFSTMFFSHRENTVSTLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVIGKEPIGYTQGSFARNYLVQELNIDESRLVPLTTPEEAAKALRKGPENGGVAAYIDERAYTDIFLSSRCDLTVIGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDSGDLQRIHDKWLLSSACLSQGAKFEVERLQLKSFWGLYMICGLACLLALFIYLIQIWRQYHKHYVSEELHSTDGQNIGSKSSHLKTFLSFVDEKEETFKSRSKRRKMERISYRNSEGSLSISSNQGYASRRSECASEV* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1347 938 SUPERFAMILY Periplasmic binding protein-like II 451 814 - -
Gso1g1347 938 Gene3D - 778 811 - -
Gso1g1347 938 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Gso1g1347 938 CDD GluR_Plant 472 812 - -
Gso1g1347 938 PANTHER GLUTAMATE RECEPTOR 3.6 11 925 - -
Gso1g1347 938 SUPERFAMILY Periplasmic binding protein-like I 28 464 IPR028082 -
Gso1g1347 938 Gene3D - 148 425 - -
Gso1g1347 938 Gene3D - 470 582 - -
Gso1g1347 938 Gene3D - 741 777 - -
Gso1g1347 938 Gene3D - 50 400 - -
Gso1g1347 938 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Gso1g1347 938 MobiDBLite consensus disorder prediction 913 931 - -
Gso1g1347 938 MobiDBLite consensus disorder prediction 899 938 - -
Gso1g1347 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 925 - -
Gso1g1347 938 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Gso1g1347 938 PIRSF IGluLR_plant 1 937 IPR017103 -
Gso1g1347 938 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Gso1g1347 938 Pfam Bacterial extracellular solute-binding proteins, family 3 493 812 IPR001638 -
Gso1g1347 938 Gene3D - 583 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1347 Gso-Chr1 50115959 50121167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1347 5 915 Ion Channels AT3G51480 58.004 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1347 K05387 - gmx:100793320 1850.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1347 1 50115959 50121167 Gso11g0736 11 6575268 6580164 GST
Gso1g1347 1 50115959 50121167 Gso16g0909 16 24730674 24735680 PCT
Gso16g0909 16 24730674 24735680 Gso1g1347 1 50115959 50121167 PCT