Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1346 ATGAAGTGTCGTGTTTCAATCTTTCTGTTATCCCTAATCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTTATCCGCCTCACAATCCCAACAACTCTCTCTTCCCTCTCTACCAGCACCCTCGCTTAAACCGGCCACGGCACTTGTTGCTGCCCTCGATGGCACTATGTATTTGGTGGACAGTGTTTCTGGGAGGGTTTTTTGGTCTTTTTCAACTGGATCTCCCATCTACCACCACTCCTATCGTGCTCCCATCAATGACCCTGAGGACAACAACGTTACCGGTCTCATCGAATGCGGAGATGACTGGGAATTGATCGTCCACGATGCTCGCTTTGGTAAAACGAGACTCTCCGAATCAATTGCAAATTATGTTGCTTTAACCCCTACCGAAACAAAGGAGGGAGCATCGATATTTGGATCCAAAAAAGACACTATGTTTGAAGTGGATGCTAAAACTGGAGCGCTTGTTCGAACGCACTATGATCTTGATAATGCTTCTAATGTGGTGTTGAGTGGTGATGATCGGCTGCAGCGTGTTACAACTACAAAGAATAATGAGCTTGTTGATCCTGCACAGCTGGACTCACCTGAGTTTTTGCTCAAGATAACTAGGTCTGATTATGTTTTGAAATCTCTTGGTAAAGCAGGAATAGTTTTGTGGACTATGAACGTGGCAGAATTTAAGGCTAGATTAATTTGCCAACATAATGAAAATCCTTCTGGAAGGGATTCGTTTGATGCAGAGGATGGGTATGTTGTAGACCGTGGCTTAGATTTTGCTATGCCGTATGCATGTTGGGACATGAAACTGAATGAAGTCTACCGCCAACGCAAGAATTTTCTGTTACATCCTGCTGACCCTGGAAGATTGTCTGGTATTTATCAAGAGAATATTATGCTCCCATTCCATACTTCAGAGCTGATGCTTCCATCACAACCTGATATGGATGGATTTATCCTTGGTCAGGGCGGTAATATGATGCTACCTTTGCCCATATCAAATTCTTTGCCCTCTTTGCAACAAAAACTCGATTTCTGTGAGAGCAATGATAATGTAGCCATGCTCCCTTGGCCTCTTATGGAGATCAGTACACAAGAGGAAGTTGATCCAAAAAAGGTGATTGAATGGTCAACAACACTACCCCTTATATTATTTACCATCTTTCTTGGCTTTTTTGTTTTCTACCACTATTTGGTGGTTACAAATAAAGACCAAAACAGGGAGTTAAATTCAAGAAGTTTACCTCCTAAGAAGAAGAAAGCACGCAAGTCAGTAAAGAACAATATCACCATTGACAACAGACAGGATAAACCTATGTCATCAGCTGAGGAGGATAAACTAGCACGTAAGGAGACAAACACTGATACATATACACAAATGCAAGTTGATGGACGCAGAATTGGTAAACTGTTTGTGTCAAACAAAGAAATTGCTAAGGGAAGCAATGGTACCATTGTTTTTGAGGGGACATATGAAGGCCGAGTTGTTGCTGTCAAACGTCTTGTCAAAGCCCATCATGATGTAGCCCATAAAGAAATCCAAAATCTCATTGCATCTGATAGACATCCAAACATTGTTCGATGGTATGGGGTGGAATGTGATCATGATTTTGTTTATCTTGCTCTAGAACGTTGTACATGCAACTTGGATGATTTAATTCATATGTACTCTGATATATCAGAGAACCCGACAATTTGCGAGGATCAATATTCTAATTTTTTTAAAAATGCTCGAATCGATACGAGGAATGATATGCGATATCTTTGGAAAGCAAATGGATTTCCATCACCTCTGTTACTGAAACTGATGAGGGATGTAGTTTCTGGACTTGTTCATTTGCATGAACTAGGAATAATACATCGAGATTTGAAACCCCAAAATGTTTTGATATTAAAAGAAAAATCATTATGTGCAAAGCTTTCTGATATGGGAATTAGTAAACGCCTTCTTGAGGATATGTCTTCTTTGGGTCACACTGTTACTGGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAGCAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGCATTCTCTTTTTCTGCATGACTGGAGGAAGACATCCATTTGGAGAACGTCTTGAGCGGGATTTCAATATTGTGAAAAATCAAAAGGATCTTTTCTTAGTGGAGTTTATTCCTGAAGCCGACGATCTTATTTCTTGTTTGTTAAACCCTAACCCTGATCTCAGACTAACAGCGATTGAAGTATTGCATCATCCTCTTTTTTGGAGCTCTGAGATGAGACTTTCATTTCTTCGTGATGTAAGTGACAGAGTGGAACTTGAAGACAGAGAAATTGATTCTGATCTTTTGAAGGCTCTAGAAAGCATTGCTCCACTGGCTTTAGGTGCAAAATGGGATGAGAAGCTAGATCCTGATTTCATAACTAACATTGGTCGTTACCGGAGATATAAATATGACAGTGTTCGACACTTGCTGAGGGTCATGAGAAATAAGCTAAATCACTACAGGGAATTGCCTCAAGAAATTCAGGAACTGATAGGACCTGTTCCGGAAGGATTCAATGACTACTTTGCAAGTCGATTTCCAAGACTCTTAATTGAAGTGTACAAAGTTATATACAAAAGTTGCAAGGACGATGAATGTTTTCAGAGATATTTTAGATACATTAACTAG 2688 0.4029 MKCRVSIFLLSLILLFFFFFFFFFSLSASQSQQLSLPSLPAPSLKPATALVAALDGTMYLVDSVSGRVFWSFSTGSPIYHHSYRAPINDPEDNNVTGLIECGDDWELIVHDARFGKTRLSESIANYVALTPTETKEGASIFGSKKDTMFEVDAKTGALVRTHYDLDNASNVVLSGDDRLQRVTTTKNNELVDPAQLDSPEFLLKITRSDYVLKSLGKAGIVLWTMNVAEFKARLICQHNENPSGRDSFDAEDGYVVDRGLDFAMPYACWDMKLNEVYRQRKNFLLHPADPGRLSGIYQENIMLPFHTSELMLPSQPDMDGFILGQGGNMMLPLPISNSLPSLQQKLDFCESNDNVAMLPWPLMEISTQEEVDPKKVIEWSTTLPLILFTIFLGFFVFYHYLVVTNKDQNRELNSRSLPPKKKKARKSVKNNITIDNRQDKPMSSAEEDKLARKETNTDTYTQMQVDGRRIGKLFVSNKEIAKGSNGTIVFEGTYEGRVVAVKRLVKAHHDVAHKEIQNLIASDRHPNIVRWYGVECDHDFVYLALERCTCNLDDLIHMYSDISENPTICEDQYSNFFKNARIDTRNDMRYLWKANGFPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLILKEKSLCAKLSDMGISKRLLEDMSSLGHTVTGCGSSGWQAPEQLVQGRQTRAVDLFSLGCILFFCMTGGRHPFGERLERDFNIVKNQKDLFLVEFIPEADDLISCLLNPNPDLRLTAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDREIDSDLLKALESIAPLALGAKWDEKLDPDFITNIGRYRRYKYDSVRHLLRVMRNKLNHYRELPQEIQELIGPVPEGFNDYFASRFPRLLIEVYKVIYKSCKDDECFQRYFRYIN* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1346 895 MobiDBLite consensus disorder prediction 411 457 - -
Gso1g1346 895 CDD RNase_Ire1 763 891 - -
Gso1g1346 895 Pfam Protein kinase domain 476 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1346 895 ProSiteProfiles Protein kinase domain profile. 474 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1346 895 Gene3D - 30 225 IPR015943 GO:0005515
Gso1g1346 895 Gene3D Transferase(Phosphotransferase) domain 1 585 761 - -
Gso1g1346 895 Gene3D KEN domain 762 894 IPR038357 -
Gso1g1346 895 SUPERFAMILY Protein kinase-like (PK-like) 462 772 IPR011009 -
Gso1g1346 895 PANTHER IRE1-RELATED 13 891 IPR045133 GO:0004521|GO:0004674|GO:0030968
Gso1g1346 895 SMART serkin_6 474 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1346 895 ProSiteProfiles KEN domain profile. 762 893 IPR010513 GO:0004540|GO:0006397
Gso1g1346 895 Gene3D Phosphorylase Kinase; domain 1 460 546 - -
Gso1g1346 895 PANTHER SERINE/THREONINE KINASE DOMAIN PROTEIN 13 891 - -
Gso1g1346 895 MobiDBLite consensus disorder prediction 440 455 - -
Gso1g1346 895 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 50 185 IPR011044 -
Gso1g1346 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Gso1g1346 895 SMART PGNneu 824 878 - -
Gso1g1346 895 Pfam Ribonuclease 2-5A 765 891 IPR010513 GO:0004540|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1346 Gso-Chr1 50108021 50115053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1346 500 758 MAP Kinase Kinase Kinase AT3G06030 26.996 2.56e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Gso1g1346 Pkinase 2.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1346 K08852 - gmx:100785363 1705.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1346 1 50108021 50115053 Gso11g0737 11 6581206 6587462 GST