Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1342 ATGACGCGAGCGTTCAGAATTCTCGGGTCCGCGGACAACGCCACCTCGCTGGCAGCGGTAGCGGCGCCGCCGGAGGCGGTGGCGCTTGAGTCGGACTTCGTGGTGATTCTCGCGGCGCTCCTCTGCGCCCTCATCTGCGTGGTGGGGCTGGTGGCCGTGGCGCGGTGCGCGTGGTTCCGGCAAGGCTCCGGCGGCGGAAGCTCTCCCCGGCAAGCCTTGGCGAACAAGGGCCTAAAGAAGAAGGTGCTGCAGTCGCTGCCGAAGTTCGCGTACGTGGACAGCAACCCCAGCAAGTGGGTGGCGACATCGGAATGCGCGATCTGCCTCGCCGACTTCGCCGCCGGCGACGAGATCCGCGTGCTGCCGCAGTGCGGCCACGGCTTCCACGTTCCCTGCATCGACACGTGGCTTGGGTCCCACTCTTCTTGCCCCTCCTGTCGGCAGATTTTGGCGGTGACCAGGTGTCAGAAGTGTGGGCGTTTTCCGGCCACCGGGGCCGGAGCTTCCAGAACGCCTGCGACCGAACCCGAATTGAAGTCCAGAGAAGACAACAATGTCGCTAGTAACAGTAGTAACAATATTAATAACAACAGCGACAGCGGTGGCAATAACAGTAACTGTAACATAGAACATCATCACAGCCATCATGTGAATAGTGGGTTCTTGCCATGA 672 0.6131 MTRAFRILGSADNATSLAAVAAPPEAVALESDFVVILAALLCALICVVGLVAVARCAWFRQGSGGGSSPRQALANKGLKKKVLQSLPKFAYVDSNPSKWVATSECAICLADFAAGDEIRVLPQCGHGFHVPCIDTWLGSHSSCPSCRQILAVTRCQKCGRFPATGAGASRTPATEPELKSREDNNVASNSSNNINNNSDSGGNNSNCNIEHHHSHHVNSGFLP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1342 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Gso1g1342 223 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Gso1g1342 223 CDD RING-H2_PA-TM-RING 104 147 - -
Gso1g1342 223 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 182 - -
Gso1g1342 223 Pfam Ring finger domain 104 147 IPR001841 -
Gso1g1342 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 182 - -
Gso1g1342 223 SUPERFAMILY RING/U-box 84 152 - -
Gso1g1342 223 MobiDBLite consensus disorder prediction 165 223 - -
Gso1g1342 223 MobiDBLite consensus disorder prediction 183 208 - -
Gso1g1342 223 SMART ring_2 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1342 Gso-Chr1 50056301 50057400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1342 5 183 C3H Transcription Factor Family AT1G76410 58.824 2.67e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1342 - - gmx:100789620 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1342 1 50056301 50057400 Gso11g0741 11 6629155 6630434 GST