Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1340 ATGGAGATGTTTTTGAAACCATTTGTTGCAACTCTTTTAGTTTTGTTTTTTATCCTCTATGATGTATCTTTGGCAACTATGGAGAATAAAAGTGCAGAGAACCCGAAAGGTACTTACATAGTCCACTTGGCCAAATCCGAAATGCCATCAAGCTTCAATCAGCATTCAATATGGTACAAATCAGTTTTGAAATCAGCATCCAACTCGGCAGAAATGCTTTACACATATGACAATGTGATTCATGGATTCTCAACCAGATTAACACATGAAGAAGCATGGTTACTGAGGAGTCAAGCTGGTATTCTAAAAGTGCAACCAGAGAAAATATACAAGCCACACACAACTCGAACACCACATTTCCTTGGACTCGACAAAATCGCCGACATGGTCCCTGAGTCAAACGAAGGAAGTGACATCATTATCGGACTCCTCGACACAGGTGTTTGGCCCGAAAGCAAGAGCTTTGACGACACCGGGCTAGGACCGATCCCCAACACATGGAAGGGAAAATGCGAATCAAGCGTTGATTTCAATGCCTCAAGTTGCAATAAGAAGTTGATAGGAGCTAGGTCTTATTCAAAAGGCTACGAGGCTATGATGGGTCCCATTATTGGAATAACCAAATCGCCTCGAGACATTGACGGCCACGGCAGCCACACTGCAAGCACAGCCGCGGGATCTGTAGTGAAAGGCGCAAGCCTATTCGGCTATGCTTCCGGTACAGCGCGTGGGATGGCCTCACGCGCTAGGGTTGCTGTCTATAAGGTTTGTTGGAAAGATTCTTGTGTTGTTTCTGACATATTGGCTGCAATAGACGCAGCCATCTCTGACAACGTCAATGTCCTTTCAATATCACTTGGTGGTGGTGGATCAAAGTATTACGATGACGATGGCGTTGCAATTGGAGCCTTTGCAGCAATGGAGAAAGGGATTCTAGTTTCTTGCTCAGCAGGAAATGATGGCCCTGATCCATCGTCTCTCGGCTCCAACACAGCACCTTGGGTGATCACGGTGGGAGCTGGTACAATCGATCGTGATTTCCCAGCGTATGTTAGCCTTGGGAATGGAAAAAATTATTCTGGAGTGTCATTGTTTAGTGGCAATTCTTTGCCCGATAATAATTCTCTCTTTCCAATCACATACGCCGGGATTGCAAGCTTTGATCCATTAGGAAATGAGTGTTTATTTGGAAGCTTGGATCCAAAAAAGGTTAAAGGGAAAATTGTGTTGTGCGATCTTGGAAATATTCCTATGGCAGAGAAAGGGTTTGCGGTGAAATCTGCCGGCGGTGTGGGCTTAGTGTTGGGAACAGTGGAAAACGATGGGGAGGAACAAGCAACAGAACCCACTAATTTGCCAACAATTGTAGTAGGTATTGAAGCTACAAAAGCAATAAAAAAGTACCTATTGTATGATCCAAAATCGATGGCTACGATTGTGTCTCAAGGAACAAAGGTTGGAATTGAGCCATCGCCAGTTGTTGCGGAGTTTAGCTCTCGTGGTCCAAATCTACTTACGCCACAGGTAATGAAACCCGATTTAATTGCGCCAGGTGTTGATATTTTAGGGGCATGGACAAGACATAAGGGTCCCACTGATTACAAAGAAGATCATAGGCGCGTGGACTTCAATATAATCTCGGGAACATCAATGTCATGCCCTCACGTGAGCGGGATAGCGGCTATAATAAAGTCAGTTAATCCAAATTGGAGCCCCGCCGCAATCCGATCTGCACTAATGACCACTGCTTATTCGACTTACACAAATGGTAAAAGTTTGATAGATAGTGCCACAAACAAATCGTCAACACCATTTGATATTGGTGCTGGACATGTGAACCCAGTTCTTGCGCTTAATCCAGGACTCGTTTATGATTTGACGACCACGGATGATTATCTCCACTTCCTTTGTGCGTTAAACTACACACCCAAAAGGATCGAGTCCGTGGCCAGGAGAAAGTACAAGTGTGATCCTCACAAACACTACAATGTAGCCGACCTAAATTACCCTTCTTTTAGTGTGGTGTATAAAACAAACAACCCAACGATTGTTAAGCACACTCGAACTCTTACTAATGTTGGGGTCGCAGGAACATACAATGTATCGGTTACGTTGGATATTCCATCTGTCAAAATCGTAGTTGAGCCGAATGTCTTGAGCTTCAACCAAAATGAGAACAAGTCATATACAGTCACATTTACACCATCCGGTCCATCGCCCTCGACTGGTTTTGGTTTTGGACGTTTGGAATGGTCAAATGGAAAGAACATTGTTGGAAGTCCTATCTCAATATATTTTGAGCCTCCTGGCGTCATTGGAAACTCCTAA 2328 0.4412 MEMFLKPFVATLLVLFFILYDVSLATMENKSAENPKGTYIVHLAKSEMPSSFNQHSIWYKSVLKSASNSAEMLYTYDNVIHGFSTRLTHEEAWLLRSQAGILKVQPEKIYKPHTTRTPHFLGLDKIADMVPESNEGSDIIIGLLDTGVWPESKSFDDTGLGPIPNTWKGKCESSVDFNASSCNKKLIGARSYSKGYEAMMGPIIGITKSPRDIDGHGSHTASTAAGSVVKGASLFGYASGTARGMASRARVAVYKVCWKDSCVVSDILAAIDAAISDNVNVLSISLGGGGSKYYDDDGVAIGAFAAMEKGILVSCSAGNDGPDPSSLGSNTAPWVITVGAGTIDRDFPAYVSLGNGKNYSGVSLFSGNSLPDNNSLFPITYAGIASFDPLGNECLFGSLDPKKVKGKIVLCDLGNIPMAEKGFAVKSAGGVGLVLGTVENDGEEQATEPTNLPTIVVGIEATKAIKKYLLYDPKSMATIVSQGTKVGIEPSPVVAEFSSRGPNLLTPQVMKPDLIAPGVDILGAWTRHKGPTDYKEDHRRVDFNIISGTSMSCPHVSGIAAIIKSVNPNWSPAAIRSALMTTAYSTYTNGKSLIDSATNKSSTPFDIGAGHVNPVLALNPGLVYDLTTTDDYLHFLCALNYTPKRIESVARRKYKCDPHKHYNVADLNYPSFSVVYKTNNPTIVKHTRTLTNVGVAGTYNVSVTLDIPSVKIVVEPNVLSFNQNENKSYTVTFTPSGPSPSTGFGFGRLEWSNGKNIVGSPISIYFEPPGVIGNS* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1340 775 ProSiteProfiles Serine proteases, subtilase domain profile. 120 618 - -
Gso1g1340 775 Pfam Fibronectin type-III domain 666 764 IPR041469 -
Gso1g1340 775 Pfam Subtilase family 136 588 IPR000209 GO:0006508|GO:0008236
Gso1g1340 775 PRINTS Subtilisin serine protease family (S8) signature 136 155 IPR015500 -
Gso1g1340 775 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Gso1g1340 775 PRINTS Subtilisin serine protease family (S8) signature 547 563 IPR015500 -
Gso1g1340 775 PANTHER TRIPEPTIDYL-PEPTIDASE II-RELATED 26 767 - -
Gso1g1340 775 Gene3D Peptidase S8/S53 domain 138 630 IPR036852 GO:0004252|GO:0006508
Gso1g1340 775 CDD PA_subtilisin_like 350 479 - -
Gso1g1340 775 SUPERFAMILY Subtilisin-like 112 622 IPR036852 GO:0004252|GO:0006508
Gso1g1340 775 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 26 767 IPR045051 -
Gso1g1340 775 Gene3D - 344 487 - -
Gso1g1340 775 ProSitePatterns Serine proteases, subtilase family, serine active site. 548 558 IPR023828 -
Gso1g1340 775 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 113 IPR037045 -
Gso1g1340 775 CDD Peptidases_S8_3 110 584 IPR034197 -
Gso1g1340 775 Pfam Peptidase inhibitor I9 38 111 IPR010259 -
Gso1g1340 775 Gene3D - 636 766 - -
Gso1g1340 775 Pfam PA domain 397 464 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1340 Gso-Chr1 50026879 50029315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1340 16 764 Subtilisin-like Serine Gene Family AT5G67360 62.815 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1340 - - gmx:100783771 1527.3