Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1333 ATGAGTGATGCAAAAGAAAACGAGGTAGCTAGCCAGGGCATGCCCTCGGTCGTGGAAGAAAACCAACAGTTGGTTGATGCTGAGGTTCAAGATCAACCTGAAACTGCCTCTGCTCCTGTTCCAGTAGAGGAAACTTCAAATCATGTTGAAATTACAAAGGAAGAACCACGTGCCGAGGATAAAAATGCAGAACTTGAGGCTGTTTCAGAGGGAATTCCACAAGAAGATGTTCAAAATACTCTTCTCTATGTCCCAGTAGAGTCTGATGCTCAGATTTTGGATAGGACTGAGTCTGAAGAAGCTTCTGTTGCGAAGGTGGAAGCTGATGAATTAGCCCAGAATAATAAGGAGGCCGAGAATAATGATGATGTTCATCAAAATAGTAATGGTAATGTTGAGATGGCTTTGGAGGTGAAGCCTGAAGCCTGTGGAATGGCTGATAGTAAAGCATGTGATAATGGTGACCCTGTGCCTGCAAGTCATAATGAGCTTGCTACGCACCTACCTGCTCCTGCAGATACAAACACTGAAATTATGAATGTATTAGAAGTTGAGAATAAGGCTGACGAAAAGCAAGCTACTGAACCTGCAGATAATGGGAAATCAAATTCAAAGTACATGCTTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACAGAGGAGGAGCAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAATTCTATGGAGAAGGATTAAATTGCCTTAAGCTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAGCCTCCGAAGACATGTACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTGAATGTTCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGGCCTCTGTATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAGGGGTGGCACTCACAACGCCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATATACACAAACGTAAGAAGCCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCGTCTAAACCACAATTGGACACAACTGTGATTGATATTGGACCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTGCTGAGGGAAGAGGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTGAACATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACATCCGCGGTGGTGACACTGCATGGGCAGTTGTTTGTTCGTGTCCCGTTTGAACATTTAGAATAG 1563 0.4383 MSDAKENEVASQGMPSVVEENQQLVDAEVQDQPETASAPVPVEETSNHVEITKEEPRAEDKNAELEAVSEGIPQEDVQNTLLYVPVESDAQILDRTESEEASVAKVEADELAQNNKEAENNDDVHQNSNGNVEMALEVKPEACGMADSKACDNGDPVPASHNELATHLPAPADTNTEIMNVLEVENKADEKQATEPADNGKSNSKYMLFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPVASHPEPINIENQASVSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINIHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEHLE* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1333 520 SUPERFAMILY ARID-like 219 326 IPR036431 GO:0003677
Gso1g1333 520 MobiDBLite consensus disorder prediction 1 30 - -
Gso1g1333 520 SUPERFAMILY HSP20-like chaperones 429 515 IPR008978 -
Gso1g1333 520 Coils Coil 101 128 - -
Gso1g1333 520 MobiDBLite consensus disorder prediction 1 79 - -
Gso1g1333 520 ProSiteProfiles ARID domain profile. 224 315 IPR001606 GO:0003677
Gso1g1333 520 SMART bright_3 225 316 IPR001606 GO:0003677
Gso1g1333 520 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 11 518 IPR045147 GO:0006357
Gso1g1333 520 CDD ARID 226 311 - -
Gso1g1333 520 CDD ACD_sHsps-like 435 515 - -
Gso1g1333 520 Gene3D - 423 520 IPR008978 -
Gso1g1333 520 Pfam Hsp20/alpha crystallin family 437 516 IPR002068 -
Gso1g1333 520 Gene3D - 224 321 IPR036431 GO:0003677
Gso1g1333 520 MobiDBLite consensus disorder prediction 47 66 - -
Gso1g1333 520 SMART ARID_2 221 311 - -
Gso1g1333 520 Pfam ARID/BRIGHT DNA binding domain 227 311 IPR001606 GO:0003677
Gso1g1333 520 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 11 518 - -
Gso1g1333 520 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 420 520 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1333 Gso-Chr1 49904927 49911208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1333 205 518 ARID Transcription Factor Family AT1G76510 62.696 2.16e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso1g1333 HSP20 2.8e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1333 - - gmx:100781627 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1333 1 49904927 49911208 Gso11g0747 11 6713451 6719818 GST