Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1316 ATGCCACAGAACTGCATAGCACCAAAACCAGAATTCTGCAATAGTCATAACTCTGTGGAAGGTCCCCCAGAGATGACTGAGCCACATAACTCAACTGTCCTTTCCTATCCCATGCAAGCCAATGAACAACAACAACAACCTTTCCCAAAACTCATTATGTACCCCATAACTCTGAAGTTTGAGGAGTTGGTTTACAAAGTTAAACTAGAGCAGAAAGGAGGGTGCTGGGGAAGTACATGGACTTGCAAGGAGAAGACCATACTGAATGGAATCACTGGTGTGGTGTGTCCAGGAGAAATACTAGCTATGTTGGGGCCATCAGGCAGTGGCAAAACCACACTTCTCACAGCACTCGGAGGCCGGCTCAACGGCAAACTATCCGGTAAGATCACGTACAACGGCCAACCTTTCTCCGGTGCCATGAAGAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGCTATACCCTCACCTAACCGTCACCGAAACTCTAGTGTTCACTGCACTCCTAAGGCTTCCAAACACCTTGAAACGAGACGAAAAAGTTCAGCATGTTGAGAGAGTGATCACTGAGCTAGGATTGACTCGTTGCAGGAGCAGCATGATAGGAGGACCACTTTTTAGAGGAATATCAGGTGGAGAGAAAAAGAGAGTGAGCATAGGCCAAGAAATGCTCATCAACCCAAGCCTCTTGCTGCTAGATGAGCCTACTTCAGGCTTGGATTCCACCACAGCACAAAGGATCCTTAACACGATCAAACGCCTAGCTAGCGGCGGTAGAACCGTTGTCACAACTATTCACCAACCCTCTAGTAGGCTCTACTACATGTTTGATAAGGTGGTGTTGCTCTCTGAAGGCTGCCCCATCTATTATGGTCCTGCTTCAACTGCCTTGGACTATTTCTCATCTGTTGGCTTTTCCACATGTGTGACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAACGGGATTGCCCCAGACTCCAAGCATGCAACTGAACAAAGTGAGGGACTGGAACAGGAGAGAAAGCAGGTTAGAGAATCTCTCATCTCTGCTTATGAGAAGAATATAGCTACAAGGCTGAAAGCTGAGGTTTGCAGCCTGGAAGCTAACAACTACAATATCATAAAAGATGCTTGTGCAAGAAATTCGATAAAGCCAGATCAATGGTGCACGAGCTGGTGGCATCAGTTCAAAGTACTATTACAAAGGGGAGTGAGGGAGCGAAGGTATGAAGCCTTCAACAGGCTGAGAATATTCCAAGTTGTAAGTGTCGCTTTTCTAGGTGGACTATTGTGGTGGCATACTCCAGAGTCACACATTGATGATCGGGTTGCCTTGCTCTTTTTCTTTTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCAGTTTTCACATTCCCTCAAGAGAGGAGAATGCTGATCAAGGAACGGTCTTCGGGAATGTACCGCCTTTCTTCCTACTTTCTGGCTAGAACAATAGGAGACTTGCCTCTGGAGCTTGCACTACCAACTGCATTTGTCTTCATAATCTATTGGATGGGAGGGCTTAAACCTGATCCTATGACTTTTATCCTTTCACTTCTTGTGGTTCTTTACAGTGTTGTTGTCTCTCAAAGCCTTGGTTTAGCTTTTGGTGCTATTTTGATGGAGGTTAAACAGGCAACTACTCTAGCTTCTGTGACAACCCTTGTGTTTCTCATTGCTGGAGGGTACTATATACAACAGATTCCTCCATTCATAGTGTGGCTCAAGTACTTGAGCTATAGCTACTACTGTTACAAGCTGCTTTTAGGTGTCCAGTACAATGAAAATGACTATTATGAATGCTCAAAGGAGGAGCTGTGCAAAGTTGCAGACTTTCCTCCTATCAAATCAATGGGCTTGAATCATTTGTGGGTTGATGTGTGCATTATGGCCATGATGTTGGTGGGTTATCGACTTGTTGCTTATTTAGCACTGCATAGAGTTAGGTAG 1980 0.4525 MPQNCIAPKPEFCNSHNSVEGPPEMTEPHNSTVLSYPMQANEQQQQPFPKLIMYPITLKFEELVYKVKLEQKGGCWGSTWTCKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLNGKLSGKITYNGQPFSGAMKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNTLKRDEKVQHVERVITELGLTRCRSSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKRLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALDYFSSVGFSTCVTVNPADLLLDLANGIAPDSKHATEQSEGLEQERKQVRESLISAYEKNIATRLKAEVCSLEANNYNIIKDACARNSIKPDQWCTSWWHQFKVLLQRGVRERRYEAFNRLRIFQVVSVAFLGGLLWWHTPESHIDDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPDPMTFILSLLVVLYSVVVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYNENDYYECSKEELCKVADFPPIKSMGLNHLWVDVCIMAMMLVGYRLVAYLALHRVR* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1316 659 Pfam ABC-2 type transporter 398 603 IPR013525 GO:0016020|GO:0140359
Gso1g1316 659 Gene3D - 77 304 IPR027417 -
Gso1g1316 659 Pfam ABC transporter 89 238 IPR003439 GO:0005524
Gso1g1316 659 Pfam ABC-2 type transporter 267 342 IPR043926 GO:0140359
Gso1g1316 659 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 44 657 - -
Gso1g1316 659 Coils Coil 329 349 - -
Gso1g1316 659 SMART AAA_5 97 287 IPR003593 -
Gso1g1316 659 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 44 657 - -
Gso1g1316 659 CDD ABCG_EPDR 55 292 - -
Gso1g1316 659 ProSitePatterns ABC transporters family signature. 210 224 IPR017871 GO:0005524
Gso1g1316 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 302 IPR027417 -
Gso1g1316 659 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 310 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1316 Gso-Chr1 49685494 49688700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1316 87 286 Calmodulin-binding Proteins AT2G36910 30.000 2.39e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1316 K05681 - gmx:100780191 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1316 1 49685494 49688700 Gso1g1316 1 49685494 49688700 ECH
Gso1g1316 1 49685494 49688700 Gso11g0762 11 6877073 6880408 GST
Gso1g1316 1 49685494 49688700 Gso16g0619 16 7852335 7856164 PCT
Gso16g0619 16 7852335 7856164 Gso1g1316 1 49685494 49688700 PCT