Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1295 ATGATGTCGTCAAGAACAAGTTTTTCCGTGGTGCATGGTGAGCCTGAACTGGTGGTGCCAGCAGGACCAACTCCGCGAGAATTAAAGAACCTCTCTGACATAGATGACCAAGAAGGGTTACGTTTTCAGCATCAGGTAATAATGTTCTACCAAAAGAGTCATGTTATGGAAGGAAAACACCCTGCTACGGTTATAAAATATGGTTTGGCTGAAGCACTTGTACACTATTACCCACTAGCTGGTAGGTTGAGAGAATGGCCTAATAGAAAGTTAACAGTGGATTGCAGTGGTGAGGGCATTTTGTTCGTTGAAGCTGAGGCTCATGTTTCACTCAAGGAGCTAGGCAATTCCATTCTGCCACCATGCCCCCACATGAAGGAACTCCTCCTTGATGTTCCTGGATCACAAGGCATTCTCGGATGCCCTCTGCTGTTGTTTCAGGTAACCCGTCTAACATGTGGAGGATTTGCTTTCGCCGCACGCATGAACCACACAATCTGCGACTCACTCGGGCTAGTTCAATTTCTCACCATGGTTGGTGAGATTGCAAGAGGTGTTTCTATATCACAGTTCCCTGTGTGGCAAAGAGAACTATTCAATGCAAGAGACCCACCAAGAATCACTTATGCACACCACGAATATGATGAAACCAAACATTGCAGCAACAAAGATACAATGGACTTTGACCAAATGGCCCACGAGTCATTTTTCTTCGGCCCAAAAGAGATTGCAACCCTTAGGAGTCACCTTCCTCAGCACCTAAGAAAATGCTCAACTTTTGAGATACTATCTGCTTGCTTGTGGAAATGTCGCACCAAAGCACTTGGGCTGGAGCCCAATGAGATAGTGGGCTTATCTCCCTTTATTACTGCTCGTGGCAAAGTGGGCCTACATGTGCCCAATGGGTACTATGGCAATGCCTTTGCCTTTCCAATGGCGCTTTCTAAGGCTGGACTTTTGTGCCAAAGCCCATTGGAATATGCATTGGGTTTGATAAAAAAGGCAAAGGCCCAAATGGGTCTAGAATATGTGAAATCAGTGGCGGATCTTATGGTTCTCAAGGGTCGGCCCAAATACAAAACAAAAGAAAATTACCTTATTGGGGATACTACCCATGTGGGGTTCTATGATGTGGATTTTGGGTGGGGGAGTCCTATCTATGGAGGGCCTGCAGGGGCTATACCTTTTGTTAGCTTCTATGGACGGTTTAGAAACAATGAAGGTGAGGATGGGGTTGTTGTGCCAATTTTGTTGCCACACCATGTCATGAAGAGGTTTCTCTTTGAGCTGGTGAAGATCACAAGTGAGGTACCTGTAGGTTTGTCTTACAACAAAATAACAAATAGGTCCATGTTGTAA 1359 0.4533 MMSSRTSFSVVHGEPELVVPAGPTPRELKNLSDIDDQEGLRFQHQVIMFYQKSHVMEGKHPATVIKYGLAEALVHYYPLAGRLREWPNRKLTVDCSGEGILFVEAEAHVSLKELGNSILPPCPHMKELLLDVPGSQGILGCPLLLFQVTRLTCGGFAFAARMNHTICDSLGLVQFLTMVGEIARGVSISQFPVWQRELFNARDPPRITYAHHEYDETKHCSNKDTMDFDQMAHESFFFGPKEIATLRSHLPQHLRKCSTFEILSACLWKCRTKALGLEPNEIVGLSPFITARGKVGLHVPNGYYGNAFAFPMALSKAGLLCQSPLEYALGLIKKAKAQMGLEYVKSVADLMVLKGRPKYKTKENYLIGDTTHVGFYDVDFGWGSPIYGGPAGAIPFVSFYGRFRNNEGEDGVVVPILLPHHVMKRFLFELVKITSEVPVGLSYNKITNRSML* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1295 452 PANTHER LOW QUALITY PROTEIN: METHANOL O-ANTHRANILOYLTRANSFERASE-LIKE 9 434 - -
Gso1g1295 452 Gene3D - 10 212 IPR023213 -
Gso1g1295 452 Pfam Transferase family 14 426 - -
Gso1g1295 452 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 9 434 - -
Gso1g1295 452 Gene3D - 213 428 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1295 Gso-Chr1 49399581 49403262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1295 17 430 Monolignol Biosynthesis Gene Families AT5G48930 30.023 6.70e-51 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1295 - K19861 gmx:100817429 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1295 1 49399581 49403262 Gso1g1295 1 49399581 49403262 ECH