Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1294 ATGAAGAGCATAAACGACGACGCTTCAACCCAAGATGTCGACCCTCAGAGCGACCACAGCTCCGATTACTTAGCTCACCCTAACTCCCACCCCGAACCCCACCCTCAGCCCCGCCGTCCGCGGGGCTTCGCGGCGGCGCCGGTCACCACCAATACCGGCGGCAAGGGGAAGAAGGAGAGGGAGAAGGAGAAGGAGCGCACCAAGCTCCGCGAGCGACACCGTCGAGCCATCACCAGCCGCATGCTCGCCGGACTCCGCCAGTACGGAAATTTCCCCCTGCCAGCGCGTGCCGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGCTGGGTCGTCGACGCCGACGGCACCACCTACCGCCAGTGCCCCCCTCCTTCCAACGTGGGGTCATTTGCGGCTAGGTCTGTTGAAAGTCAACTCTCTGGTGGTTCTTTGAGGAATTGTTCTGTCAAGGAAACTATTGAGAACCAGACAGCTGTGCTTAGAATTGATGAATGCTTGTCGCCTGCATCCATTGATTCCGTTGTAATTGCAGAAAGGGACTCAAAGAATGAGAAATATACAAATGCTAGACCCATCAATACAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATGACTTTACTAGCACGCCATACGTTTCTGTTTATGTAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATAAAGCAGGAGCTCATCCATATCAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCTCACAGAAATATGTCTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAACTGAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAACGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAAGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTTTCTTGGGGGATTGACAAAGAACGAGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTGGAGGTTGGACTTGGAGCATCTGGAGAGCTAAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATTGGTGAGTTTCAGTGCTATGATAAATACCTGCAAAATAGTCTGCGCAGAGCAGCCAAATTGCATGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAGCGAGGCGATTATGACAACTATTATGGACGCTTCTTCTTACACTGGTACTCCCAGACATTAATAGACCATGCAGATAACGTTTTGTCTCTTGCAACCCTTGCTTTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAATCCAACATATCAGGATGGATACTCTCCTGTGTTTGAGGTTCTGAGAAAACATGCTGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGTCAGGAAGCTTATGAACCGTTGATTGATCCAGAGGGTTTGAGTTGGCAGGTGCTAAACTCAGCTTGGGATCGTGGGTTGATGGCTGCTGGAGAGAATGCACTCCTTTGCTATGGTAGAGAAGGATACAAGAGATTGGTTGAGATGGCAAAGCCCAGAAATGATCCTGATTGCCGGCACTTCTCTTTCTTTGTTTATCAGCAACCATCTTTGCTGCAGGCAAATGTTTGCTTGTCTGAACTGGATTTCTTCGTCAAATGCATGCATGGTGAGATGTCAGATCTATAA 1971 0.4683 MKSINDDASTQDVDPQSDHSSDYLAHPNSHPEPHPQPRRPRGFAAAPVTTNTGGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSNVGSFAARSVESQLSGGSLRNCSVKETIENQTAVLRIDECLSPASIDSVVIAERDSKNEKYTNARPINTVDCLEADQLMQDIHSGVHENDFTSTPYVSVYVKLPAGIINKFCQLIDPEGIKQELIHIKSLNVDGVVVDCWWGIVEGWSSQKYVWSGYRELFNIIREFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQNSLRRAAKLHGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTYQDGYSPVFEVLRKHAVTMKFVCLGFHLSSQEAYEPLIDPEGLSWQVLNSAWDRGLMAAGENALLCYGREGYKRLVEMAKPRNDPDCRHFSFFVYQQPSLLQANVCLSELDFFVKCMHGEMSDL* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1294 656 MobiDBLite consensus disorder prediction 1 24 - -
Gso1g1294 656 Pfam BES1/BZR1 plant transcription factor, N-terminal 54 201 IPR008540 -
Gso1g1294 656 Gene3D Glycosidases 215 656 - -
Gso1g1294 656 MobiDBLite consensus disorder prediction 54 71 - -
Gso1g1294 656 Pfam Glycosyl hydrolase family 14 242 618 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 SUPERFAMILY (Trans)glycosidases 219 653 IPR017853 -
Gso1g1294 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 259 273 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 280 298 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 302 323 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 395 417 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 468 487 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 502 518 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 519 530 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 537 560 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 575 597 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 MobiDBLite consensus disorder prediction 1 71 - -
Gso1g1294 656 PANTHER - 59 654 IPR001554 GO:0000272|GO:0016161
Gso1g1294 656 PANTHER BETA-AMYLASE 8 59 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1294 Gso-Chr1 49381429 49388362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1294 14 655 Glycoside Hydrolase AT5G45300 65.230 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Gso1g1294 Glyco_hydro_14 5e-87 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1294 K01177 - gmx:100816365 1326.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1294 1 49381429 49388362 Gso1g1294 1 49381429 49388362 ECH
Gso1g1294 1 49381429 49388362 Gso9g1793 9 42384275 42390235 GST