Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1293 ATGGGGTCCAGTGCCAGCAAGGCCACGTCATCATCGTCCTCTTCGGGGAGTTGCAGGAAGGGTCGATCTAAGGGACACCGAGGTTTCCCATCTTATTGTCTGGGAGCCTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAATGGAGAGGATGTGACATACAGTAGTGGCAATGAAATAGATTCAGATGAGGTGAAGACAGAGTCTTTTAGAAAGGTTAAATCTGATAAATCTGATGAAGTGCCTTGTGTGCCTTCCAACATTGACCTTGAGGAGTGGGGCCACACTGCATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAATCAGTCCTTGAACCCTTCAAGCCGATTCCTTTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCGGTTTCTTCAGAGAGTCTCTCAATATTTAACAATGAAGATGAGCTTAATCTGCCTCCAGGGCTTCCTGGCAGCTTGATCAATAGAAATGAAACTCAACACCGTTGTGACTTGCTTAATGCATCTCTTGCTAGTCAAGTGCCTATACAGTGTCATCAAGAAGCTTCCAATAATTTAAGATCCAATACCCTGACATTGGTTTCCCCTGGCAACTTGGTTAGCAGTCGCATTTCTTCTGTTCAGGATGTGGTCAGAGATGGAAATGGTACTAGAGAAGTGCCGGATATGAACTTGTTTTCTCCAAGAATTCATACTGATACAGAAGATATTGAGACTAGACATACTGATAGACGGAATGGAGCTCGAGAGCCTGTTGAACGTAATGTTCGTTTTAGCCGGACATTAAGTGTTGGAAGGCTCCGTGACAGGGTTCTCCGCCGAACAACAGTATCGGACTTCACATTTTGCCCTCTGCAACGAGAGAGAGATGCTAGTCAAGATAATGGAAGACGGGCAGGGGAGAGAGACACAAGACTGTCACCATCTGGTCGTAATGCTACAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCCTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGATCTAGAGAAACTAGGTATCAGGACCTACTGGAGCATAGGTCCAATTTCCTCGAACGGAGGAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTATCTGGTCAACATAGAAATGGTCGTTGTGCATGCAGAATCAATAGTCGTGATACCAATTCAAATGATGATACCAATGCAAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTATGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACTAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCACTATGTCGAGGGGATATCTGTGCATCTGATTCACTGCCAAGGGAGAACTAA 1704 0.4472 MGSSASKATSSSSSSGSCRKGRSKGHRGFPSYCLGASSGSRDIDSDDQVCDQNKVNGEDVTYSSGNEIDSDEVKTESFRKVKSDKSDEVPCVPSNIDLEEWGHTASRTGSSSAHSSSNQSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSESLSIFNNEDELNLPPGLPGSLINRNETQHRCDLLNASLASQVPIQCHQEASNNLRSNTLTLVSPGNLVSSRISSVQDVVRDGNGTREVPDMNLFSPRIHTDTEDIETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRTTVSDFTFCPLQRERDASQDNGRRAGERDTRLSPSGRNATNSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRINSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSMVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICASDSLPREN* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1293 567 MobiDBLite consensus disorder prediction 315 357 - -
Gso1g1293 567 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 567 - -
Gso1g1293 567 MobiDBLite consensus disorder prediction 104 123 - -
Gso1g1293 567 CDD mRING-H2-C3H2C2D_ZSWM2 511 554 - -
Gso1g1293 567 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Gso1g1293 567 SMART ring_2 512 553 IPR001841 -
Gso1g1293 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 559 IPR013083 -
Gso1g1293 567 MobiDBLite consensus disorder prediction 1 19 - -
Gso1g1293 567 Pfam Ring finger domain 511 554 IPR001841 -
Gso1g1293 567 MobiDBLite consensus disorder prediction 69 87 - -
Gso1g1293 567 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Gso1g1293 567 MobiDBLite consensus disorder prediction 317 332 - -
Gso1g1293 567 MobiDBLite consensus disorder prediction 334 357 - -
Gso1g1293 567 MobiDBLite consensus disorder prediction 1 123 - -
Gso1g1293 567 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 567 - -
Gso1g1293 567 SUPERFAMILY RING/U-box 490 559 - -
Gso1g1293 567 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1293 Gso-Chr1 49371854 49377298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1293 228 561 C3H Transcription Factor Family AT5G45290 62.500 1.19e-121 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1293 - - gmx:100815830 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1293 1 49371854 49377298 Gso1g1293 1 49371854 49377298 ECH
Gso1g1293 1 49371854 49377298 Gso9g1792 9 42377277 42382607 GST
Gso1g1293 1 49371854 49377298 Gso16g0608 16 7624401 7629864 PCT
Gso16g0608 16 7624401 7629864 Gso1g1293 1 49371854 49377298 PCT