Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1292 ATGGAGAATGTGAGAATAAGGCAGTGGTTGAACCTTCTGGTGTGTGCACTGCTGTTGCTGATATCAGAAGCTTCTTATGTGCCAATCACTATTGTTCAGAACGCGGTAGCTAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAATCGTCTAGGTTCATCTAAGCAAATGGCGAAGCAAATTGCCTTTTCAGGAATTTTGAACAACAGGGCAATGTTTAATCCAGATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCATTTACTGGTGATGTGGAAGCAGTGAATCCGGTAACTAAGTTGCACTTCAGAGGAGCAAGGATTTTCAATGCTGTCATGGAAGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATGCTATTATCTCAGGATGCTCAGCCGGAGGATTAACATCAGTACTGCATTGTGATCGATTTCGAGCTCTATTACCTAGAGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGCAAAGGATGTTTTGGGAGAACAACACATTGAGCAGTATTTCAGTCAAGTTGTTGTCACACATGGCTCTGCCAGGAGTTTGCCTCAATCATGCACTTCAAGACTTAGCGCAAAACTCTGCTTTTTCCCACAATATTTGGTGTCACGCATTACTACACCAATCTTCTTTGTAAACGCGGCATACGACTCATGGCAGATTAAGAACATTTTGGCACCGGGTGTTGCTGATCCTGAAGGCCATTGGCATAGCTGCAAGCTTGATATAAACAACTGCTCACCTGATCAACTCGATCTAATGCAAGGGTTCAGGACAGAATTTTTAAGGGCTATAACTGTGCTTGGCAACTCTTCATCCAAAGGAATGTTCATAGACTCTTGCTATGCCCACTGCCAAACTGAAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGACCTTTCCATCAGATAGATTGCCCTTACCCTTGCAACCCCACTTGTCACAACCGCGTTTTCGATCCACAAGAAGACCACCCAGGAAAAAATGTGACCGCGAAAGGAACATCAGATGCATCAGCCACAAAGTCCAATTTCCCCAAACTAACAAACAAGGTACGATGGATTGAACTTGTGTGCATTAATCGTGGAATCAGTGGGCTTCTACTAACGTTGGTTCTTCTGGTGTGA 1344 0.4338 MENVRIRQWLNLLVCALLLLISEASYVPITIVQNAVAKGAVCLDGSPPAYHFDKGFGSGINNWLVAFEGGGWCNNVTTCLARKTNRLGSSKQMAKQIAFSGILNNRAMFNPDFYNWNRIKVRYCDGSSFTGDVEAVNPVTKLHFRGARIFNAVMEDLLAKGMKNARNAIISGCSAGGLTSVLHCDRFRALLPRGARVKCLSDAGYFINAKDVLGEQHIEQYFSQVVVTHGSARSLPQSCTSRLSAKLCFFPQYLVSRITTPIFFVNAAYDSWQIKNILAPGVADPEGHWHSCKLDINNCSPDQLDLMQGFRTEFLRAITVLGNSSSKGMFIDSCYAHCQTEMQETWLRSDSPELKKTTIAKAVADWFYERRPFHQIDCPYPCNPTCHNRVFDPQEDHPGKNVTAKGTSDASATKSNFPKLTNKVRWIELVCINRGISGLLLTLVLLV* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1292 447 Pfam Pectinacetylesterase 22 371 IPR004963 GO:0016787
Gso1g1292 447 PANTHER PECTIN ACETYLESTERASE 3 407 - -
Gso1g1292 447 PANTHER NOTUM-RELATED 3 407 IPR004963 GO:0016787
Gso1g1292 447 MobiDBLite consensus disorder prediction 393 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1292 Gso-Chr1 49360772 49368678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1292 5 398 Carbohydrate Esterase AT4G19420 60.839 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1292 K19882 - gmx:100818146 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1292 1 49360772 49368678 Gso1g1292 1 49360772 49368678 ECH
Gso1g1292 1 49360772 49368678 Gso9g1791 9 42366392 42373718 GST
Gso1g1292 1 49360772 49368678 Gso16g0878 16 21736457 21742821 PCT
Gso16g0880 16 21811143 21815574 Gso1g1292 1 49360772 49368678 PCT