Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1288 ATGAAGCAGCCATCAAAGCCATGGAGACCCTTCACGGCAAATTGCTGCTCCACAGAGGACCAAACCATCTTTAAGAACTTCAGCAGGTGCAAGCCATCACGTTCAGATTTGTCAAAGAACATTGCACCTTTGCCATCATTCAGGAGGCTCTCTTTCTCCGATCTCAGCCGTTCGTCGTCGACGCGAATCAACGAGGATCTTGCACAGTCTTTTGGCTCGGATTTGTTTGATTTTCAGCTGAGTGAGCTGCGTGCGATAACTCAGAATTTTTCTAGCAATTTCTTGCTGGGTGAAGGTGGCTTTGGAACAGTGCATAAGGGTTACATAGATGACAATTTGAGGCTGGGTTTGAAGGCACAGCCTGTTGCAGTTAAGCTTCTTGACATTGAAGGATTACAAGGACACCGTGAATGGCTTGCAGAAGTGATTTTTCTTGGGCAGCTAAGACACCCCAATTTGGTTAAGTTGATTGGATATTGTTGTGAAGATGAAGAACGACTACTTGTCTATGAATTCATGCCACGAGGAAGTTTGGAGAATCACCTCTTCAGAAGGCTAACATCACTGCCATGGGGAACAAGATTAAAAATCGCAACAGGTGCTGCCAAAGGCCTTTCCTTCTTGCATGGAGCTGAGAAACCAGTCATTTATAGAGACTTCAAGACTTCCAATGTTTTGCTTGATTCAGAGTTCACGGCAAAATTGTCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCAAACACACATGTTTCGACTAGAGTCATGGGCACTTATGGATATGCAGCCCCAGAATACATCTCAACAGGGCACTTGACCACCAAAAGTGATGTCTATAGCTTCGGGGTAGTCCTGCTAGAACTGCTTACAGGAAGGAGAGCAACAGACAAGACAAGACCAAAAACTGAGCAAAACCTTGTGGATTGGTCTAAACCTTACTTGAGTAGCAGTAGGAGGTTGAGGTACATTATGGATCCAAGGCTTTCAGGCCAATATTCTGTGAAGGGTGCAAAGGAGATGGCACATTTGGCATTGCAATGCATAAGTTTGAATCCTAAAGACAGACCAAGAATGCCAACGATTGTTGAAACTCTTGAAGGCTTGCAACAGTACAAGGACATGGCTGTTACCAGTGGACACTGGCCAGTGTCACCAAAATCTACCAAAAATAGAGTCTCCAACAATAATAAGCAAAATCCATCCCAACAAACGCTCATGGTTCATTGCATTCATGCCTTAGTGCCTTTCTACCCCCCATAG 1263 0.4466 MKQPSKPWRPFTANCCSTEDQTIFKNFSRCKPSRSDLSKNIAPLPSFRRLSFSDLSRSSSTRINEDLAQSFGSDLFDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYIDDNLRLGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWGTRLKIATGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSEFTAKLSDFGLAKMGPEGSNTHVSTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNLVDWSKPYLSSSRRLRYIMDPRLSGQYSVKGAKEMAHLALQCISLNPKDRPRMPTIVETLEGLQQYKDMAVTSGHWPVSPKSTKNRVSNNNKQNPSQQTLMVHCIHALVPFYPP* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1288 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Gso1g1288 420 Gene3D Transferase(Phosphotransferase) domain 1 173 382 - -
Gso1g1288 420 Pfam Protein tyrosine and serine/threonine kinase 96 366 IPR001245 GO:0004672|GO:0006468
Gso1g1288 420 MobiDBLite consensus disorder prediction 382 401 - -
Gso1g1288 420 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL15-RELATED 31 401 - -
Gso1g1288 420 SUPERFAMILY Protein kinase-like (PK-like) 70 369 IPR011009 -
Gso1g1288 420 Gene3D Phosphorylase Kinase; domain 1 52 172 - -
Gso1g1288 420 MobiDBLite consensus disorder prediction 380 401 - -
Gso1g1288 420 PANTHER OS01G0588500 PROTEIN-RELATED 31 401 - -
Gso1g1288 420 ProSiteProfiles Protein kinase domain profile. 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1288 420 CDD STKc_IRAK 96 369 - -
Gso1g1288 420 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1288 Gso-Chr1 49322951 49328826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1288 78 387 Glycoside Hydrolase AT3G07070 51.274 2.39e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso1g1288 PK_Tyr_Ser-Thr 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1288 - - gmx:100820300 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1288 1 49322951 49328826 Gso1g1288 1 49322951 49328826 ECH
Gso1g1288 1 49322951 49328826 Gso9g1785 9 42321037 42324864 GST