Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1272 ATGGAGAGGTACAAGTTAATTAAGGAAGTTGGTGATGGGACTTTTGGGAGTGTCTGGAGAGCTATTAATAAGCAAACCGGTGAAGTTGTTGCTATCAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAAGGTGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGCCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGAAAACTTGCTGGTTACCAAGGATTTTATCAAAATCGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGGTATCGTGCTCCTGAGGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGTGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTTTGAATCATGGGCGGATGGACTCAAACTTGCAAGGGATATTAACTACCAGTTTCCACAGCTTGCCGGTGTGCATCTTTCTGCTTTAATTCCGTCTGCTAGTGATGATGCAATCAGCCTTATTACATCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTCAGAGGCACTTCAACATCCTTTCTTCCAGAGTTGCTTTTACATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCGCTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTGCTTTACCTACTTCAAAGCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGGTGTGCAACGGAAGCTGGATATGGTAAATCAGGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGTCAGCCAGGAAAGGACAGCCCAACTTCTATGAACAAAGGGAGGTCTGTACGTGGGGTTTCAGAAACAGCTGAAAAGTTGGGCAATTTGTCTGTTTCCAGTCGAAGACAATCAATGGGGCAACCTCGTCCTCCTCCACCAATGAAGGCTGGAGGCAATTGGATTTCTGAATCTGGAAACTTCATCCTTGGGCCCGCACAGCAGATTCCGACTGGAAGAACTTTTGCAAGAAAAGTTGCCTGA 1353 0.4405 MERYKLIKEVGDGTFGSVWRAINKQTGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSEGEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDFIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSYLYTSKVDMWAMGAIMAELFSLRPLFPGASEADEIYKICGVIGNPTFESWADGLKLARDINYQFPQLAGVHLSALIPSASDDAISLITSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRNRAVARTPPPAGTRGALDQQGVKRYSGALPTSKLSNNFSSMKLHPPLASGVQRKLDMVNQDGIKNEKPMRTTKPKYRQPGKDSPTSMNKGRSVRGVSETAEKLGNLSVSSRRQSMGQPRPPPPMKAGGNWISESGNFILGPAQQIPTGRTFARKVA* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1272 450 Gene3D Transferase(Phosphotransferase) domain 1 83 288 - -
Gso1g1272 450 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1272 450 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Gso1g1272 450 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1272 450 CDD STKc_MAK_like 4 283 - -
Gso1g1272 450 MobiDBLite consensus disorder prediction 322 450 - -
Gso1g1272 450 MobiDBLite consensus disorder prediction 322 337 - -
Gso1g1272 450 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Gso1g1272 450 MobiDBLite consensus disorder prediction 372 387 - -
Gso1g1272 450 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 412 - -
Gso1g1272 450 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Gso1g1272 450 PANTHER CYCLIN-DEPENDENT KINASE F-4-LIKE ISOFORM X1 1 412 - -
Gso1g1272 450 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1272 450 MobiDBLite consensus disorder prediction 353 371 - -
Gso1g1272 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1272 Gso-Chr1 49125159 49131998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1272 1 290 Core Cell Cycle Gene Families AT3G48750 37.584 7.96e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Gso1g1272 Pkinase 1.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1272 K08829 - gmx:100810150 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1272 1 49125159 49131998 Gso1g1272 1 49125159 49131998 ECH
Gso1g1272 1 49125159 49131998 Gso9g1758 9 42040538 42047084 GST