Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1271 ATGTTTACATGCATAGCGTGCACGAAGCAAGCGGCGAAGGAGAAGGAAGAAGAGGGTGAGAGTGGCACGCCGAGTACAAATAAAGAAGCCGTCAAAAGCCTGAGTGCTCAGTTAAAGGATATGGCACTGAAGTTTTCAGGTGCCTACAAGCAGTGCAAACCTTGCACAGGGTCTAGTACCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCTTATATTGGAGGTGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCAATTTCCTTGGTGCTAGATCAGACCAAAGATTTATGGGGGGATTCAGTGGTGATAGGACCCCTAGAGGGCCTCAATCAGCACCAGCCTGTGATGTAGTTGTTGAGGATGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGAGGAAATGATCTCAAAAGAATTCGCTTTAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAACTTTACAACGTGCAGAGATTCAATCGACAAGCTCTTAATACTCCTTCAAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGAATGACATCTGGACATGATAGCCCCATGCACTCAATGTCTTTAAAGGACTGGACACCCAGGAATCACTATAAACCCTCAGGGAATAACCCTTCTGAAGCTATGGATCAAGGTGGTGGTGGCCAAAATTTCCATGCAGCTTCATCCGTGGAAGCATCAAGGACAACCACCTCTTCTAGAGACGAGCGTTCAATGAGCAATGCCAGTGATTTGGAGACAGAATGGATAGAGCAAGATGAACCTGGAGTCTACATTACAATCAGGCAATTAGCTGACGGAACAAAGGAGCTTCGCCGTGTCAGATTCAGCCGGGAGAGATTTGGGGAGGGACATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATATCTTTGA 1047 0.4623 MFTCIACTKQAAKEKEEEGESGTPSTNKEAVKSLSAQLKDMALKFSGAYKQCKPCTGSSTYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSNFLGARSDQRFMGGFSGDRTPRGPQSAPACDVVVEDEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREIFDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRMTSGHDSPMHSMSLKDWTPRNHYKPSGNNPSEAMDQGGGGQNFHAASSVEASRTTTSSRDERSMSNASDLETEWIEQDEPGVYITIRQLADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1271 348 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 348 - -
Gso1g1271 348 MobiDBLite consensus disorder prediction 243 292 - -
Gso1g1271 348 Pfam Transcription factor BRX N-terminal domain 21 55 IPR027988 -
Gso1g1271 348 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 348 IPR044532 -
Gso1g1271 348 MobiDBLite consensus disorder prediction 10 33 - -
Gso1g1271 348 MobiDBLite consensus disorder prediction 204 294 - -
Gso1g1271 348 ProSiteProfiles BRX domain profile. 293 348 IPR013591 -
Gso1g1271 348 ProSiteProfiles BRX domain profile. 140 195 IPR013591 -
Gso1g1271 348 Pfam Transcription factor regulating root and shoot growth via Pin3 292 347 IPR013591 -
Gso1g1271 348 Pfam Transcription factor regulating root and shoot growth via Pin3 140 194 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1271 Gso-Chr1 49115769 49123059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1271 1 348 Major Intrinsic Protein MIP AT1G31880 64.444 2.00e-156 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1271 - - gmx:100809614 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1271 1 49115769 49123059 Gso1g1271 1 49115769 49123059 ECH
Gso1g1271 1 49115769 49123059 Gso9g1757 9 42031975 42038846 GST