Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1258 ATGGTCGAGCCTGCAGTAGCAGCAAGCTCAGAATTATCAGACTCAACACGAAACACCAACACCAACACCCCTTCACCCTCTTCCTCATCGTCGTTATCTCCGTCGCCATCACCGTCATCATCAAGCTCTAAAAAGCGAGCGAGAGACAACAACAATAGTAGAAACAACAGCAACAAGCATTCTGTGTATAGAGGTGTCCGAATGCGCACGTGGGGCAAATGGGTGTCGGAAATCCGCGAGCCGCGAAAGAAGAACCGAATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCCCACGACGTGGCGGCGCTGACGATAAAAGGCTCATCCGCCATCCTTAACTTCCCCGAACTCGCCGCCTCCCTGCCCCGGCCGGCCTCCAACTCGCCCCGCGACGTGCAGGCCGCGGCAGCCAAGGCGGCGTCCATGGAGGCGCCGCCGCGGACCCCTCCGTCGCCGGCCGCCACGCCGGAGGATGACCTCGGCGAGATCGTGGAGCTGCCGCCGCTCGGAACGAGTTTCGACTCGCCCGACCGGAGTTCCGAGTTTGTGTTCCTGGACATGGACGACGGGTGGCCCTATTCTCACCCGTGGTACCACAGCATTTATGATGGTGGGTACTTCATTAGCGACATGAACAACATGGTTTCGATGCAAGAGTCAGAGAGCATGGTTCTTTCCCTGTGGCCTTGA 702 0.5954 MVEPAVAASSELSDSTRNTNTNTPSPSSSSSLSPSPSPSSSSSKKRARDNNNSRNNSNKHSVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAASLPRPASNSPRDVQAAAAKAASMEAPPRTPPSPAATPEDDLGEIVELPPLGTSFDSPDRSSEFVFLDMDDGWPYSHPWYHSIYDGGYFISDMNNMVSMQESESMVLSLWP* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1258 233 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Gso1g1258 233 CDD AP2 61 121 IPR001471 GO:0003700|GO:0006355
Gso1g1258 233 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Gso1g1258 233 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Gso1g1258 233 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 16 220 - -
Gso1g1258 233 MobiDBLite consensus disorder prediction 1 64 - -
Gso1g1258 233 MobiDBLite consensus disorder prediction 126 161 - -
Gso1g1258 233 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Gso1g1258 233 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Gso1g1258 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 220 - -
Gso1g1258 233 MobiDBLite consensus disorder prediction 9 46 - -
Gso1g1258 233 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Gso1g1258 233 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1258 Gso-Chr1 48953759 48954924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1258 15 213 AP2-EREBP Transcription Factor Family AT5G11590 51.570 5.67e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso1g1258 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1258 K09286 - gmx:100804801 401.749