Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1255 ATGTCTGAATTGAAGGGATGTGATAATCTTATAAAGAAGCTTCGACGAGTAGCAATAAATGTTGCTGAAGGACAAATATCCAGAGCACCTTCTATTCATCCTTTTTTGATTTGTAGGGACCTCAGCTATGGTCTAGAAGCCATACCCATTCCAGTTACAAATGAGATCGATGATTCTCCTATCACACCTATCGACTTTACATATATCACATCTATCCAAGTTGCAAAAAACGTGAAAGTTCCATCTAGTGATGATTATGGCTGTCAATGCAAAGGAAATAGTTGTAGAATTAACAAGACTTGTTGTTTTAGACTAAACAACATGTATCCATATGTTCGTCGTGGGAACTGTAGCAGATTGGTCGGAGCTAGAGATATTGTGTTTGAATGTGGTCCAAGATGTGGATGTGGACCTGATTGTGGCAGTAGAGTATCTCAGAAGGGTTTGCAGTACCAGCTTGAGGTTTATCGTACGTCTAACAAAGGATGGGCTGTTAGAACTAGAAATTTCATTCCTATTGGAGCTTTAGTTTGTGAAGTTGTTGGAGTACTAAAGAGAACTGAAGACTTGGAGAATGCTTCACACAATGACTACATTATTGAAATTGACTGCTGGGAAACTATAAAAGAGATAGGTGGACGAAAGAAACGATTGCCTGACGAACCATTGCCTGCAAAAATTTTCCTTGGACAAAAGGATGATGAGACAACCAAAAATGAGCCAGAGTTCTGTATAGATTGTAGTTCTTTTGGTAATGTGGCTAGGTTCATCAACCATAGTTGTGATCCTAACCTATTTGTTCAATGTGTTCTGAACTCTCATTATGGGGTCAAACAAGCTCGACTCGTACTATTTGCAGGAAGAAACATTCGTCCTAAACAGGAACTTACTTATGACTATGGTTACCGACTTGATAGTGTTGTTGATGCCGATGGAAAAATCAAGCAATTGCCATGTTACTGCGGTGAAGCTACTTGTCGCAAGCGTTTATACTAG 996 0.3926 MSELKGCDNLIKKLRRVAINVAEGQISRAPSIHPFLICRDLSYGLEAIPIPVTNEIDDSPITPIDFTYITSIQVAKNVKVPSSDDYGCQCKGNSCRINKTCCFRLNNMYPYVRRGNCSRLVGARDIVFECGPRCGCGPDCGSRVSQKGLQYQLEVYRTSNKGWAVRTRNFIPIGALVCEVVGVLKRTEDLENASHNDYIIEIDCWETIKEIGGRKKRLPDEPLPAKIFLGQKDDETTKNEPEFCIDCSSFGNVARFINHSCDPNLFVQCVLNSHYGVKQARLVLFAGRNIRPKQELTYDYGYRLDSVVDADGKIKQLPCYCGEATCRKRLY* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1255 331 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4-LIKE ISOFORM X1 1 330 - -
Gso1g1255 331 Gene3D SET domain 31 331 IPR046341 -
Gso1g1255 331 SUPERFAMILY SET domain 29 307 IPR046341 -
Gso1g1255 331 ProSiteProfiles Post-SET domain profile. 315 331 IPR003616 -
Gso1g1255 331 ProSiteProfiles SET domain profile. 151 301 IPR001214 GO:0005515
Gso1g1255 331 SMART preset_2 38 135 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso1g1255 331 Pfam Pre-SET motif 42 143 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso1g1255 331 SMART PostSET_3 315 331 IPR003616 -
Gso1g1255 331 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 330 - -
Gso1g1255 331 SMART set_7 151 307 IPR001214 GO:0005515
Gso1g1255 331 ProSiteProfiles Pre-SET domain profile. 86 148 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso1g1255 331 Pfam SET domain 162 301 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1255 Gso-Chr1 48906061 48910154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1255 19 331 EF-hand Containing Proteins AT5G13960 53.016 6.02e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso1g1255 SET 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1255 - K11420 gsj:114425719 610.142