Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1248 ATGGGTTGCATTTACTCGCGAGTCTGCATAGGCGACAATTGCAGAGGCTCCAGCATCAACGGAGACCCCATCGCGCGAAACGACGTCGCCGAAGTCGTGAATTTCTCCCCTTCCTCTTCGGATGTTGAAGAAGGCGAAATCAGAGACCAATTGAACCAATTGAGCATCACCAGAGACTCTGAAGCTGGAATCCGAAGACTCGCTAGGGTTTCCGCGCAGTTTCTTCCACCGGACGGTTCCCGAATCGTGAATGTTCCTTCCGGAAACTTCGAATTGCGGTACTCGTTCTTGTCGCAACGAGGTTACTACCCCGATGCACTCGATAAAGCTAACCAAGACAGTTTCTGCATCCACACACCTTTTGGTACGAGCCCTAACGACCACTTCTTCGGCGTCTTCGACGGCCATGGCGAGTTCGGAGCTCAGTGTTCTCAGTTCGTGAAGCGGAAACTGTGCGAGAATTTGCTCAGGAACTCCAAATTCCGTGCTGATCCTGTTGAGGCTTGTCACGCGGCGTTTTTAGCGACGAATTCGCAGCTGCACAACGATGTTTTGGACGACAGCATGAGCGGGACGACGGCGATTACGGTGCTGGTGAGAGGGAGGACGATATACGTGGCGAATTCCGGCGATTCGAGGGCGGTGATCGCGGAGAGGAGAGGGAAGGAAGTTGTGGCCGTTGATTTGTCGATTGATCAGACGCCTTTTAGGAGTGATGAGCTGGAGAGGGTGAAGATGTGTGGGGCGAGGGTTCTTACTATGGATCAGATTGAGGGGTTGAAGAACCCTGATGTGCAGTGTTGGGGCACTGAGGAAGGTGATGATGGTGACCCTCCGAGGTTGTGGGTGCCGAATGGGATGTATCCGGGGACGGCGTTTACGCGGAGTATTGGTGATTCCATTGCTGAGACTATTGGGGTTGTGGCAAATCCTGAGATTGTTGTGTTTGAGCTCACACAGGATCACCCTTTCTTTGTGCTGGCCAGTGATGGGGTGTTTGAGTTTTTGTCTAGCCAGACTGTGGTTGAAATGGTTGTGAAATTTAAAGATCCTCGTGATGCTTGTGCTGCAATTGTGGCAGAATCTTATCGGCTCTGGCTGCAGTATGAAACTCGTACAGATGACATTACAGTCATCATTGTGCATGTAAATGGACTAACTGAATCTGCTGTTGGTCAGTCAGCAAGTTATGGTGATGTTTTGCGAAACCCTGTGCCTCAAGTTGTAGAGGTGACAGGTTCAGAATCCCCTTCCACCTTTGGTTGGAGCGCTAGAAACCATCGTGTAAGGCATGACTTGTCAAGGGCACGCCTTCGAGCACTTGAAAATTCCCTAGAAAATGGTCAATCCTGGGTTCCTCCATCTTCAGCCCATAGGAAGACATGGGAAGAAGAAGAAGAAAAAGATGGGGAGGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTTTCATGCTTTGGAGAACTTGCTCTAATGTATAATAAACCCCTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACTCTTTGGGCTTTAAAACGAGAAGATTTTCGAGGGATTTTAATGTCAGAATTCTCTAACTTGTCATCATTGAAGTTGCTTCGGTCTGTAGATCTCCTTTCAAGGTTGTCAATTTTACAACTCAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCCTTCTCAAATGGGCAGACAATAATAGACAAAAATGAAGTCCTTGCATTGTACATTATCCAGAAGGGACGAGTGAAAATCACTTTTGATTCTGATTTATTGACTGGTCCAAATGCCTACAGCCTCAAGCCTGAAATCCAAAATGAGGATGATGCACAGAGCGGAAAAGAACTGTCAATAGAGAAGCCCGAGGGAAGCTATTTTGGTGAATGGGCCCTTCTTGGTGAAAATATTGGTTCCTTGAGTGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTACTAACAAAGGACAAATTTGAATCTGTTATTGGCTCCTTACAAAAGATTTCTCAGGAAGATCACAAGTCAAGGGATTATTCCAAGGAGTTGACTACAAATTATGATTTTTCATCCCTTGATAAAGTCCAGCTCTCAGATTTGGAGTGGAGAAAGACGCTATATTCCACTGACTGCTCTGAAATAGGGCTTGCAAATTTAAGAGATTCAGAAAGTTTGCTTACTTTGAAGAGATTTTCTAAGCCAAAGGTGAAAGGGCTAGGAAAGGAATCACAAGTCTTGAAAGAGAAAATTTTGATTAAGGGTATGGGCTCGTCAGCCTGTATACCACAGGTTTTATGCACTTGTGCTGACCGCATGTATGCTGGAATACTGCTAAACACTCGCCTTGCTTGCCCTTTGTCTTCCATACTTTCAAGTCCTTTTAGTGAATCAGCAGCGCAGTTTTGTGCTGCTTCTGTTGTTATTGCCTTGGAAGACTTGCACAAGAATGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTGGAACAAACTGGACATATACAGCTGGTGGACTTCAGATTTGGAAAACAGCTTTCTGGTGAGAGAACATTCACAATTTGTGGGATGGCAGATTCACTGGCTCCAGAGATTGTTTTGGGAAAAGGCCATGGTTTCCCTGCTGACTGGTGGGCGTTGGGAGTTTTAATATATTATATGTTACGTGGTGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGATACAGTTGCCAAAATTGCAAAAAGAAAGCTACATCTTCCCGAGACTTTTAGCCCTGAAGCTGTTGATCTCATCTCCAAGCTACTTGAAGTGGAAGAAAGCACTAGACTTGGTAGCCAAGGTCCTGATTCTGTCAAGAGTCACCCATGGTTTAATTGTATTGAATGGGAAGGGATTAGACACCACACCTTTCCCGTTCCGCAGGAAATTATTTCTCGTATAACACAGTACTTGGAAGTTCATTCTGAGGATTGTAGTACTGGTTATCTGGGTTCTCCATTGCAGGAGGTAAAAGAACTTAATGTGCCTGAATGGCTTGAGGACTGGTAG 3036 0.4582 MGCIYSRVCIGDNCRGSSINGDPIARNDVAEVVNFSPSSSDVEEGEIRDQLNQLSITRDSEAGIRRLARVSAQFLPPDGSRIVNVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSPNDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNSKFRADPVEACHAAFLATNSQLHNDVLDDSMSGTTAITVLVRGRTIYVANSGDSRAVIAERRGKEVVAVDLSIDQTPFRSDELERVKMCGARVLTMDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQTVVEMVVKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHVNGLTESAVGQSASYGDVLRNPVPQVVEVTGSESPSTFGWSARNHRVRHDLSRARLRALENSLENGQSWVPPSSAHRKTWEEEEEKDGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSNGQTIIDKNEVLALYIIQKGRVKITFDSDLLTGPNAYSLKPEIQNEDDAQSGKELSIEKPEGSYFGEWALLGENIGSLSAVAVGDVVCALLTKDKFESVIGSLQKISQEDHKSRDYSKELTTNYDFSSLDKVQLSDLEWRKTLYSTDCSEIGLANLRDSESLLTLKRFSKPKVKGLGKESQVLKEKILIKGMGSSACIPQVLCTCADRMYAGILLNTRLACPLSSILSSPFSESAAQFCAASVVIALEDLHKNGVLYRGVSPDVLMLEQTGHIQLVDFRFGKQLSGERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLIYYMLRGEMPFGSWRENELDTVAKIAKRKLHLPETFSPEAVDLISKLLEVEESTRLGSQGPDSVKSHPWFNCIEWEGIRHHTFPVPQEIISRITQYLEVHSEDCSTGYLGSPLQEVKELNVPEWLEDW* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1248 1011 SUPERFAMILY cAMP-binding domain-like 480 524 IPR018490 -
Gso1g1248 1011 Pfam Cyclic nucleotide-binding domain 475 524 IPR000595 -
Gso1g1248 1011 Pfam Cyclic nucleotide-binding domain 559 662 IPR000595 -
Gso1g1248 1011 Pfam Protein phosphatase 2C 123 362 IPR001932 -
Gso1g1248 1011 ProSiteProfiles cAMP/cGMP binding motif profile. 487 523 IPR000595 -
Gso1g1248 1011 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 36 468 - -
Gso1g1248 1011 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 481 1011 - -
Gso1g1248 1011 SUPERFAMILY Protein kinase-like (PK-like) 685 982 IPR011009 -
Gso1g1248 1011 Pfam Protein kinase domain 718 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1248 1011 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Gso1g1248 1011 Gene3D Phosphorylase Kinase; domain 1 697 783 - -
Gso1g1248 1011 SMART PP2C_4 89 381 IPR001932 -
Gso1g1248 1011 CDD CAP_ED 487 523 IPR000595 -
Gso1g1248 1011 SMART cnmp_10 540 677 IPR000595 -
Gso1g1248 1011 ProSiteProfiles cAMP/cGMP binding motif profile. 540 663 IPR000595 -
Gso1g1248 1011 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 481 1011 - -
Gso1g1248 1011 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 36 468 - -
Gso1g1248 1011 Gene3D - 88 384 IPR036457 -
Gso1g1248 1011 SUPERFAMILY PP2C-like 81 385 IPR036457 -
Gso1g1248 1011 CDD PP2Cc 109 383 IPR001932 -
Gso1g1248 1011 Gene3D Jelly Rolls 530 681 IPR014710 -
Gso1g1248 1011 MobiDBLite consensus disorder prediction 447 469 - -
Gso1g1248 1011 ProSiteProfiles Protein kinase domain profile. 699 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1248 1011 SUPERFAMILY cAMP-binding domain-like 531 669 IPR018490 -
Gso1g1248 1011 SMART serkin_6 707 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1248 1011 ProSiteProfiles PPM-type phosphatase domain profile. 93 383 IPR001932 -
Gso1g1248 1011 CDD CAP_ED 540 663 IPR000595 -
Gso1g1248 1011 Gene3D Jelly Rolls 447 529 IPR014710 -
Gso1g1248 1011 Gene3D Transferase(Phosphotransferase) domain 1 784 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1248 Gso-Chr1 48704085 48712619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1248 1 479 PP2C-type Phosphatase Gene Family AT2G20050 70.659 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Gso1g1248 Pkinase 2.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1248 - - adu:107490298 1569.67