Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1247 ATGAATCAACTTTGTGGTGTTATCCTTTTGGTTCACTCAGTCTTGTGTTTCCATGCTAGAGCACAGACTGCTGCACCTTCAGGAGATGCTGTCTCCAATTTCCAACCAAGCCTTGCTGTTGTCATAGGAATCCTTGGTGTCATGTTCTTACTCACATTCTTTCTTCTCATGTATGCAAAATTCTGTCAACGCTGCGCTTCTTCGCCCGTTGGAGACACAGAAAATCAACTCCCTTTTGTTAGATCAAGATCTAGATTCTCAGGAATTGACAAGAATGTCATAGAATCACTCCCCTTCTTCAGATTCTCTTCACTCAAAGGGTCAAAGGAAGGGCTGGAGTGTGCAGTGTGCTTATCAAAGTTTGAAGATGTTGAAATTCTCAGACTTCTACCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAAACACTCTAGCTGTCCTATTTGCAGGCACAGAGTCAACCCTGAGGACCACACAACCTTCACATATTCAAACAGTTTAAGGAGGCTAGCAAACCAGTCAGAGGTAGGTGAAGAATCTAACATAGAGATCTTTGTCCAGAGAGAGGAAGAGCATCATGGTTCATCAAGATTCAGTTTTGGAAGCAGCTTTCGGAAAACGGGAAAGTACGTCAAGGAAGAAGAATTCCTCATTGAAAAAGGAGCAGAAGATAGTGATGGTAATCAGAAGGGATATCACAAACACAACCACAGGATTACTATATCTGATGTTGTGTTCAAGCACAGGTGGAGCAACGTGAGTTCTTCAGACCTTATGTTTCTGAATTCGGAGATGCTGAACGATGCATCAAGCAACAGATTCAGCAACTTGGAATCAAATGCTGACATGATGTCTAGTACAAGAGGGGTGGTGGAAAATGAGCAAATTATGAATATTAAGGAGGAGATGGAGAGGAAGATTTCATTTGAGAGCAAAGTTGGTGTACTGAACAACATCAAATCAGTTTCAGATAAGCATCTTCTTTTTACATCAGATTCTGCAGGGAAATCAACTCATGCACCAAAGTATGCGAATCCCGGTGAGAAAAGGTCAATGTCAGAAATCACTGCTGTCTCTAGATTTGGAGATTTAGGCATGAAAATGAGGGTCTTCAAGGATTCTTCTTCCCTTCAAAACAACCTTAAAGAGGAAAGAATGAGGCAGATTTGGTTTCCAATTGCAAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGGTCTCAACAATCTCAGAATAAACAACAGCCATTAGATGTATAA 1281 0.4098 MNQLCGVILLVHSVLCFHARAQTAAPSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQRCASSPVGDTENQLPFVRSRSRFSGIDKNVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHRVNPEDHTTFTYSNSLRRLANQSEVGEESNIEIFVQREEEHHGSSRFSFGSSFRKTGKYVKEEEFLIEKGAEDSDGNQKGYHKHNHRITISDVVFKHRWSNVSSSDLMFLNSEMLNDASSNRFSNLESNADMMSSTRGVVENEQIMNIKEEMERKISFESKVGVLNNIKSVSDKHLLFTSDSAGKSTHAPKYANPGEKRSMSEITAVSRFGDLGMKMRVFKDSSSLQNNLKEERMRQIWFPIARRTAQWFVNRERRSQQSQNKQQPLDV* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1247 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 420 - -
Gso1g1247 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 165 IPR013083 -
Gso1g1247 426 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Gso1g1247 426 SMART ring_2 114 155 IPR001841 -
Gso1g1247 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 420 - -
Gso1g1247 426 SUPERFAMILY RING/U-box 93 162 - -
Gso1g1247 426 CDD RING-H2_PA-TM-RING 113 156 - -
Gso1g1247 426 Pfam Ring finger domain 113 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1247 Gso-Chr1 48698769 48700524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1247 10 422 C3H Transcription Factor Family AT4G28890 50.452 3.13e-117 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1247 K10664 - gmx:100803207 844.343