Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1244 ATGGAGCGCATCATCTGCGCCAAGTACAAGCTAGGTCGCAAGATCGGAAGCGGATCCTTCGGCGAAATCTACCTCGCGACGAATATTGATACCTTCGAGATCGTCGCCGTCAAGATCGAGAACGGTAAAACGAAGCATCCACAATTGCTTTACGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATCCCGAACATAAAATGGTGCGGCGTAGACGGGGAGGATAATGTGCTTGTTATGGACTTGCTGGGACCTAGTCTTGAGGATCTTTTTGTCTACTGTGGAAGAAAGTTCTCCCTCAAATCTGTGTTAATGTTGGCCGATCAAATGATGACTAGAATAGAATATGTGCATTCTAAAGGATTCCTACACAGGGATATAAAACCTGACAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCAGGTTTATATAATTGATTTTGGGCTTGCAAAACGATATAGGGACTCCTCAACTAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACAGGGACTGCACGCTATGCTAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTTGGGTATGTGCTTTTGTACTTCCTTAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCTGCAACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTATCAACTCCTATTGAGGTATTATGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTTCATTACTGTCACTCTCTGACCTTTGATCAGAGACCGGATTATGGATTCTTGAAGCGCCTATTTCGGGACCTATTTGCTCGAGAAGGTTATGAATTTGATTATGTATTTGATTGGACTATTTTAAAGTACCAGCAGGCACAAAAGAATAGAGTCCAGTCTCGTATATCTACAGTCCCTGGAACAAGCAGTAGTCCTGCAATGCCAATGGATGTAGACAACCATCGAGGTATTAATGCTTATTCAGGGGATGTCACAGCAGAACGCATTAAGTCAGGCAATGTTACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCAGTTGGCAAAAATTTGGGCTCTGAAAAGCCTCTGGACAAGAATATTTTTGGTGAAGCGAATATACCCTCTACCTCATACTCTGTTGCTGGTACCTCAAGAAGGAACACCTTGAAGCCTGCCTTGTCCACTGAAGCTCCTAACCCTGGACATGGGCAAGGTAGTAATAAAATTGGCCCTTCGAGTAGCTGGATTTCATCTGTGCAGCGCATATCTTCTGCCAAATGA 1299 0.4326 MERIICAKYKLGRKIGSGSFGEIYLATNIDTFEIVAVKIENGKTKHPQLLYEAKLYNILQGGSGIPNIKWCGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKSVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSSTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDYVFDWTILKYQQAQKNRVQSRISTVPGTSSSPAMPMDVDNHRGINAYSGDVTAERIKSGNVTGSGVKIQFKSPVGKNLGSEKPLDKNIFGEANIPSTSYSVAGTSRRNTLKPALSTEAPNPGHGQGSNKIGPSSSWISSVQRISSAK* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1244 432 Gene3D Transferase(Phosphotransferase) domain 1 1 327 - -
Gso1g1244 432 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 414 - -
Gso1g1244 432 PANTHER CASEIN KINASE-RELATED 1 414 - -
Gso1g1244 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gso1g1244 432 MobiDBLite consensus disorder prediction 397 432 - -
Gso1g1244 432 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1244 432 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1244 432 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1244 432 SUPERFAMILY Protein kinase-like (PK-like) 7 290 IPR011009 -
Gso1g1244 432 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso1g1244 432 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1244 Gso-Chr1 48649598 48654355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1244 3 224 Miscellaneous Gene Families AT3G23000 28.571 2.23e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso1g1244 Pkinase 2.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1244 K08960 - gmx:100798768 874.389