Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1235 ATGGTGATGATGGTGATATCAGCAATAGCGGTCATAGAGACATCAATTATGGTCGTGTTGGCAATGGCGATAGTGGAGGTGGTGGCATTGGTGGTTGTGACAATGCCAATGGTGGTAGTGGATGAGACATTACTAATGGTGGTAGTGACGAAGGTGCTAGAGTACTCTCAATATGCTCACAATGGGGAGCTTTACAAGGAGCTTAACAAAAAAGGCCATTTTAATGAGAAGCAAGCTCCTATGTATATTTTAAGCCTCACAAAGGCATTGGCGTATTGTCATGGGAAGCATGTTATTCACAGGGATATCAAGCCTGAAAATTTGTTGCTGAACCATGAGGGTCGTCTTAAGATTGCAGACTTTGGTTGGTCTGTACAGTCTAGAAGCAAAAGGCATACCATGTGCGGAACCTTGGATTATTTAGCACCCGAAATGGTAGAAAACAAAGCTCATGATTATGCGGTTCATAACTGGACTCTGGGTATCCTTTGCTATGAGTTCCTTTATGGTGCTCCTCCATTTGAGGTTGAGAGTCAAGTTGATACCTTCAAAAGGATAATGAAAGTTGACCTAAGTTTCCCTTCTACTCCCTATGTTTCTTTAGAAGCCAAAAATCTTATTAGTCGGCTGCTGGTAAAAGACTCTTCAGGAAGGCTCTCACTTCAGAGGATAATGGAGCATCCTTGGATAACCAAGAATGCAAATCCTATGGGTGTCTGCAACTAG 726 0.4256 MVMMVISAIAVIETSIMVVLAMAIVEVVALVVVTMPMVVVDETLLMVVVTKVLEYSQYAHNGELYKELNKKGHFNEKQAPMYILSLTKALAYCHGKHVIHRDIKPENLLLNHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVHNWTLGILCYEFLYGAPPFEVESQVDTFKRIMKVDLSFPSTPYVSLEAKNLISRLLVKDSSGRLSLQRIMEHPWITKNANPMGVCN* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1235 241 SUPERFAMILY Protein kinase-like (PK-like) 50 234 IPR011009 -
Gso1g1235 241 ProSitePatterns Serine/Threonine protein kinases active-site signature. 98 110 IPR008271 GO:0004672|GO:0006468
Gso1g1235 241 SMART serkin_6 3 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1235 241 Gene3D Transferase(Phosphotransferase) domain 1 28 239 - -
Gso1g1235 241 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 57 240 IPR030616 GO:0004672
Gso1g1235 241 Pfam Protein kinase domain 56 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1235 241 ProSiteProfiles Protein kinase domain profile. 1 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1235 Gso-Chr1 48496608 48502502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1235 8 236 CBL-interacting serine-threonine protein kinases AT5G10930 36.820 3.36e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Gso1g1235 Pkinase 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1235 K08850 - gmx:106794372 374.785