Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1227 ATGGATCCTGTAGCAGCACAAGGACGTCCTCTCCCTCCACCTTTTCTCACTAGAGATCTTCACTTACACCCTCACCACCAATTCCAGCCCCACCACAACCACCAAAACACCGAGGATGAAGCCGGCAATGGCCGCGGCCAGAAGCGAGATCGCGACGAGAACGCCGGCGGCGGAGGCGGGGCCACCACGCCCCCCCAGGGCGGCGGGGAAGGCAAGGAATCCGGGTCAGGAGATGGAGGAGGGAGTGACATGGGGAGAAGACCAAGAGGAAGACCCGCAGGGTCCAAAAACAAGCCCAAACCACCCATTATCATCACAAGAGACAGTGCCAACGCTCTCCGATCCCATGTCATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCATCACCGCCTTTGCAAGGCGGCGACAGCGCGGTGTCTGCGTGCTCAGCGGCAGCGGCACTGTCACCAACGTCACGCTCCGGCAGCCGGCCTCGCCGGGAGCAGTTGTGACCCTTCATGGAAGATTTGAGATTTTGTCCCTGTCCGGTTCTTTTCTGCCGCCGCCGGCCCCACCTGCGGCGTCAGGACTAGCCATATATCTGGCTGGCGGACAGGGACAGGTAGTAGGTGGAAGTGTGGTGGGACCCCTTGTGGCCTCAGGTCCCGTTGTCATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTGCCCTTAGAGGAAGAGGAAACTCCGGTGGCAGTTGCTGGCAACGGAGGATTAGGATCCCCAGGAATCCCAGGAACCCAGCAACAACCGCAACAGCAACAGCAACAACAACTTGTGGGAGATCCTAATAGTTCTTCTCTTTTCCATGGAATGCCTCAGAATCTTCTCAATTCAGTTCAATTACCGGCTGAGGGTTATTGGGGTGGAAGTGCTCGCCCTCCCTTTTAA 924 0.5758 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQPHHNHQNTEDEAGNGRGQKRDRDENAGGGGGATTPPQGGGEGKESGSGDGGGSDMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESITAFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVAVAGNGGLGSPGIPGTQQQPQQQQQQQLVGDPNSSSLFHGMPQNLLNSVQLPAEGYWGGSARPPF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1227 307 MobiDBLite consensus disorder prediction 1 104 - -
Gso1g1227 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 4 307 - -
Gso1g1227 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 110 244 - -
Gso1g1227 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 307 IPR014476 GO:0003680
Gso1g1227 307 MobiDBLite consensus disorder prediction 19 55 - -
Gso1g1227 307 MobiDBLite consensus disorder prediction 243 283 - -
Gso1g1227 307 Gene3D - 113 243 - -
Gso1g1227 307 CDD DUF296 114 181 IPR005175 -
Gso1g1227 307 ProSiteProfiles PPC domain profile profile. 110 248 IPR005175 -
Gso1g1227 307 MobiDBLite consensus disorder prediction 253 283 - -
Gso1g1227 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 226 IPR005175 -
Gso1g1227 307 PIRSF ESCAROLA 16 307 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1227 Gso-Chr1 48368741 48370500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1227 1 307 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 66.055 2.47e-91 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1227 - - gmx:100816243 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1227 1 48368741 48370500 Gso1g1227 1 48368741 48370500 ECH
Gso1g1227 1 48368741 48370500 Gso3g0180 3 2346101 2347758 GST