Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1223 ATGGATTGTGGGGGTAACAAGATTGGTGGAAGTGATAGGGGTGGGCCTTGTGGTGCCTGCAAGTTTCTGAGAAGAAAGTGTGTGAAGGGTTGCATATTTGCACCATACTTTGACTCAGACCAAGGAACGGCTCATTTTGCTGCGGTGCACAAGGTGTTTGGTGCTAGCAATGCCTCTAAGTTACTCATGCGGATTCCAGCACACAAAAGACTTGATGCTGTTGTTACTCTTTGCTATGAGGCTTTGGCTAGGGCTAGAGACCCCGTTTATGGTTGTGTTGGTCACCTCTTTGCTCTTCAACAACAGGTCATGAACTTGCAGGCTGAGTTAACCTATGTCCAGGCTCGTCTCGCGACGATGCAGCGACTGCCAATGCAAGTGGCTCCTCTTCCACACCCTCAAAGCTCTTCACCACCACCAACCTTTCATTCCTCAGATCACTTGGCATCAAATGCTGACTTGCAAAGTGCCCCTATGATGCACTTTGATCCTCTTCAGCCACATTCAGCATCATTAGAGTTAAGCAGCGTCGTTTTCAATCAATCAGATCAACAACTCGAGGATAGGGAACTCCAAGTTTTGGCACGGGAATTTGTGAGCAAATACTTGCCCGGAGTAAGGTTCCAGCAATACAACTCTCCCTGA 645 0.4806 MDCGGNKIGGSDRGGPCGACKFLRRKCVKGCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNLQAELTYVQARLATMQRLPMQVAPLPHPQSSSPPPTFHSSDHLASNADLQSAPMMHFDPLQPHSASLELSSVVFNQSDQQLEDRELQVLAREFVSKYLPGVRFQQYNSP* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1223 214 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Gso1g1223 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 11 204 - -
Gso1g1223 214 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 204 - -
Gso1g1223 214 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1223 Gso-Chr1 48260030 48265052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1223 14 209 AS2 family AT4G00210 55.189 6.28e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso1g1223 LOB 2.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1223 - - gmx:100791377 424.091