Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1219 ATGGCTAATAATTATAGTGTGTTAGAGCTCAACCTTGGTTTAGGCAACAACAACGTTGGTGGTCATGCAGGGCAATCACCAAGGCAAAGGTGCCCCGCACCGTTTCTGTTGAAAACGTACGATTTGTTGGAAGAATTAGGTGAGAACATTGAAGATAGCACCAAAATTGTGTCGTGGAATGCAGAAGGAACTGGCTTTGTTGTGTGGTCTCCATCTGAGTTCTCTGAGCTCACCTTGCCCAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAATACCTATGGATTTAAGAAAATATCATCAAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGCACATGTTAGGTGAAATCACAAGGAAAAAGTGCGAGCCAAGTGTGTTTCCTGCATACCTCAAGTCTTCTTCTGAGGAAAATAATGCAACGAGTTCCACGGAAGAAAACAATGATCATCAACTACTTATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTAGAGCTGCAAGTGCAAATAGATGAATGCAAAGCACTTGAAATGAAGTTGTTGGAATGTCTCTCTCAGTTTATGGACACCCACCAAAATAAAGTTAGGAGACTATGTTAA 630 0.4127 MANNYSVLELNLGLGNNNVGGHAGQSPRQRCPAPFLLKTYDLLEELGENIEDSTKIVSWNAEGTGFVVWSPSEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRHMLGEITRKKCEPSVFPAYLKSSSEENNATSSTEENNDHQLLMEENKNLKKERLELQVQIDECKALEMKLLECLSQFMDTHQNKVRRLC* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1219 209 SMART hsfneu3 31 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1219 209 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 209 IPR027725 -
Gso1g1219 209 ProSitePatterns HSF-type DNA-binding domain signature. 79 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1219 209 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1219 209 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1219 209 Coils Coil 152 189 - -
Gso1g1219 209 SUPERFAMILY "Winged helix" DNA-binding domain 32 129 IPR036390 -
Gso1g1219 209 Pfam HSF-type DNA-binding 35 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1219 209 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 22 209 - -
Gso1g1219 209 Gene3D - 27 130 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1219 Gso-Chr1 48219166 48221530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1219 23 201 HSF AT5G62020 35.238 1.35e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso1g1219 HSF_DNA-bind 1.8e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1219 K09419 - gmx:100789792 401.749