Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1217 ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGTGCAGAAGCTCCATCAGCTTACCATGTGGCGCCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGGTGGTGCTGCTGCTACAGCTGCACCTGTTGGTGTCTCACCTGTGAGTGCGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGGGGTAGGCCGAGGAAATATGGGCCTGATGGGTCAGTCACTATGGCATTGTCACCAATGCCAATTTCGTCGTCGGCTCCGCCTTCTAATGACTTTTCCTCCGGGAAGCGGGGGAAAATGCGGGGGATGGACTATAAGCCATCAAAAAAAGTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCGCATATCATCACTGTCAATGCTGGCGAGGACATCACGATGAAGGTGATATCCTTTTCTCAACAAGGACCACGAGCTATATGTATCTTATCTGCTAATGGTGTGATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGACTGGTGGAATGTCGGTCTCGTTGGCTAGCCCTGATGGCCGTGTTGTAGGTGGCGGAGTTGCTGGTCTTCTTGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAAATAAAGAAGTCAAAGTCTAGCGATTATGGAGTAGCAACTGTTACTCCAACCATTGCAGTGTCTCCTACACCACCACCTCCAACCAATGCCGAAAAAGAGGATGTGAATGTTATGGGTGGAGCACATGTACTGCAAAATTCTGGAACCCTCAACTCTAACCTCACTCCTCCCAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCAAGAAAGTCAGCCACTGATATTAACATATCTTTGCCTGATAGTTAA 1041 0.4765 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGAAATAAPVGVSPVSAGLDGTAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMRGMDYKPSKKVGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKIKKSKSSDYGVATVTPTIAVSPTPPPPTNAEKEDVNVMGGAHVLQNSGTLNSNLTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1217 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
Gso1g1217 346 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 345 - -
Gso1g1217 346 ProSiteProfiles PPC domain profile profile. 131 275 IPR005175 -
Gso1g1217 346 CDD DUF296 136 226 IPR005175 -
Gso1g1217 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 345 IPR039605 GO:0003680
Gso1g1217 346 Gene3D - 136 268 - -
Gso1g1217 346 MobiDBLite consensus disorder prediction 83 98 - -
Gso1g1217 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 254 - -
Gso1g1217 346 MobiDBLite consensus disorder prediction 24 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1217 Gso-Chr1 48147801 48155028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1217 10 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.586 1.28e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1217 - - gmx:100796830 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1217 1 48147801 48155028 Gso1g1217 1 48147801 48155028 ECH
Gso1g1217 1 48147801 48155028 Gso3g0187 3 2484240 2491265 GST
Gso18g1794 18 50394351 50399722 Gso1g1217 1 48147801 48155028 PCT
Gso9g2217 9 46513960 46519255 Gso1g1217 1 48147801 48155028 PCT
Gso1g1217 1 48147801 48155028 Gso18g1794 18 50394351 50399722 PCT
Gso1g1217 1 48147801 48155028 Gso9g2217 9 46513960 46519255 PCT