Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1210 ATGGGGAAAGAGGAGTGTTATCAAGAGTTTCAACAGAAAAAGTTAGAGACCGAGCCGGAGAGCAAAAAGATAAAACGCATTCATGGCGGCGTCGATGAGGACTTGAGCAATAAGCACCCTTTGTACCACGACGTGCGGATGCGGAACTGGGGGAAATGGGTGTCAGAAATCCGCGAGCCGTGGAAGAAGTCGCGGATATGGCTAGGCACATTCCCAACGCCAGAAATGGCGGTGTGGGCGCACAACGTGGCGGCTCTTAGCATCAAAGGCTCCGCCGCCATTCTCAACTTCCTTCACTTTGCCAACTCGCTCCCTTGCCCAACTTATCTCACGCCGCAAGACGTTCAAGCCGCGGCGGCCAAAGTGGTGCACATGGACCCTTCTTCCCTCTCCTCCCTCAATGAGCAAGTTCAATTTCATCTCGATGTTTTGGATCTTGATCTTGCTATAATGGAAGAGAAGTCTGCTACTATTACTGATGCTAGTAGCAATGAAGAGAAAGTCCATTATAAAGTTTGGGAAAGATATAACAGACTTAACCTAATGTTCATGAGAATGACTGTTGCAGACATTATTAAGACAGCTCTCCCTAAGACCGATAATGCTAAACAGTTTATGGGATTTAAGGAAAATACTGTTGATCGGCGTATATATCTAAAGGCCAGTGGGAGTAAGGGAACAAAAAATCACATGCTTACATATAGAAGGTCTGATCACCTTGAGGTGATTGGGTATTCAGACTCAGACTTTGCTAGATGTGTGGATACAAGAAAACTCACTATTGGCTTTGTATTTCTTTTAGCCAAAGGAGCAGTATCATGGAAGAGTGCAAAACAATCAGTTGTTGGTGCATCTATCATGGAAGCTGAATTTTTAGCATGTTTTGAGGCTACAATTCAAGCTAATTAG 909 0.4477 MGKEECYQEFQQKKLETEPESKKIKRIHGGVDEDLSNKHPLYHDVRMRNWGKWVSEIREPWKKSRIWLGTFPTPEMAVWAHNVAALSIKGSAAILNFLHFANSLPCPTYLTPQDVQAAAAKVVHMDPSSLSSLNEQVQFHLDVLDLDLAIMEEKSATITDASSNEEKVHYKVWERYNRLNLMFMRMTVADIIKTALPKTDNAKQFMGFKENTVDRRIYLKASGSKGTKNHMLTYRRSDHLEVIGYSDSDFARCVDTRKLTIGFVFLLAKGAVSWKSAKQSVVGASIMEAEFLACFEATIQAN* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1210 302 Pfam AP2 domain 45 90 IPR001471 GO:0003700|GO:0006355
Gso1g1210 302 CDD AP2 40 97 IPR001471 GO:0003700|GO:0006355
Gso1g1210 302 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Gso1g1210 302 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Gso1g1210 302 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Gso1g1210 302 CDD RNase_HI_RT_Ty1 243 298 - -
Gso1g1210 302 MobiDBLite consensus disorder prediction 1 23 - -
Gso1g1210 302 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Gso1g1210 302 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Gso1g1210 302 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Gso1g1210 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042 13 170 - -
Gso1g1210 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1210 Gso-Chr1 48015456 48025365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1210 14 127 AP2-EREBP Transcription Factor Family AT5G11590 65.789 2.41e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso1g1210 AP2 5.1e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1210 K09286 - gmx:100786075 246.128