Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1196 CTTGAATCAGGAGGGAGAGGTATCTCCAATTCGACTCTTCCCTATAAGAGGACCTCACCAAGCTGGTTGAAGATCTCTTCTCATGAAGTGGAGGAGAACATCTGCAAGTTTGCCAAGAAAGGTCTTACTCCCTCTCACATTGGTGTTATTCTTCATGACTCTCATGGAATTGCTCAGGTGAAGAGTGTCACTGGAAGCAAGATTCTTCGTATATTGAAGGCTCACAGGCTTGCTCCTGAAATTTCGAAAGATTTGTATCACCTCATCAAGAAGGTTGTTTATATTAGGAAGCACTTGGAGAGGAACAAGAAGGACAAGGATTCTAAATTCAAGTTAATTTTGGTTGAGAGTAGGATTCACCGACTTGCCCATTACTATAAGAAGACAAAGAAGCTTCCACCTGTGTGGAAATATGAATCAACAACTGCCAACATCTCTTGTCGCTTAGAGTGA 453 0.4194 LESGGRGISNSTLPYKRTSPSWLKISSHEVEENICKFAKKGLTPSHIGVILHDSHGIAQVKSVTGSKILRILKAHRLAPEISKDLYHLIKKVVYIRKHLERNKKDKDSKFKLILVESRIHRLAHYYKKTKKLPPVWKYESTTANISCRLE* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1196 150 PANTHER 40S RIBOSOMAL PROTEIN S13 2 144 - -
Gso1g1196 150 PANTHER RIBOSOMAL PROTEIN S15P/S13E 2 144 IPR023029 -
Gso1g1196 150 CDD Ribosomal_S15p_S13e 67 140 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gso1g1196 150 SMART Ribosomal_S15_2 67 146 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gso1g1196 150 SUPERFAMILY S15/NS1 RNA-binding domain 63 139 IPR009068 -
Gso1g1196 150 Pfam Ribosomal protein S15 72 145 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gso1g1196 150 ProSitePatterns Ribosomal protein S15 signature. 95 125 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gso1g1196 150 Gene3D - 80 146 - -
Gso1g1196 150 Gene3D - 32 79 - -
Gso1g1196 150 SMART Ribosomal_S13_N_2 3 57 IPR012606 GO:0003735|GO:0005840|GO:0006412
Gso1g1196 150 Pfam Ribosomal S13/S15 N-terminal domain 3 57 IPR012606 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1196 Gso-Chr1 47497332 47501273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1196 1 144 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 82.639 2.49e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1196 K02953 - gmx:100775368 304.293