Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1169 ATGAAAGCTTTTCGCCTGCTCCTAGCACTACTAATTCCTTTTTTACTATCCTCTTTTGTTTCTGGTTATTCTTGGAATGAGGTTAAACTTTGGTGCAACCAAACCCCAAACCCTCAACCATGTGAGTATTTCTTGAGCAATAATCCTACTTATCAATACAAACCCCTCAAGCAAAAATCTGATTTCCTCAAACTTTCATTGCAACTTGCTCAAGAGAGAGCACTCAAAGGCCATGAAAACACTCTCTCACTTGGCTCTAAGTGCCGAAACCCACGTGAAAGAGTTGCTTGGGCTGATTGTGTTGAGCTTTATGAGCAAACTATTCGCAAACTCAACCAAACCCTAAAGCCTAACACCAAGCTCTCCCAAGTTGATGCCCAAACATGGCTCAGCACAGCTCTCACTAACCTTGAGACATGCAAAGCCGGGTTCTATGAGCTTGGTGTTCAAGACTATGTTCTCCCTTTGATGTCCAACAATGTTACTAAGTTGCTGAGCAACACCTTGGCCCTTAACAAGGTTCCATACCAAGAACCAAGTTACAAAGAAGGGTTTCCAACATGGGTGAAGCCAGGTGATAGAAAGTTGTTGCAAGCTTCTTCACCGGCTTCTCGAGCCAACGTAGTGGTGGCAAAAGATGGCTCTGGAAGGTTCACAACAGTGAGTGCAGCTATAAATGCAGCTCCAAAGAGTAGTAGTGGAAGGTATGTGATATATGTGAAGGGTGGGGTGTACGATGAACAAGTTGAGGTGAAAGCAAAGAATATAATGTTGGTTGGAGATGGTATTGGAAAGACTATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGTAGTTGGGGATGGATTTATAGCTCAAGGTATCACATTTAGGAACACCGCTGGTGCAAAAAACCACCAAGCTGTAGCATTGCGTTCTGGATCGGACTTGTCAGTGTTTTACAAATGTAGCTTTGAAGGTTACCAAGACACATTATATGTCCACTCTGAGAGGCAATTCTATAGAGAGTGTAACATTTATGGCACTGTTGACTTCATATTTGGCAATGCTGCAGTTGTGTTACAAAACTGTAACATATTTGCAAGAAACCCTCCCAACAAAGTCAACACAATCACTGCCCAAGGCCGAACCGACCCAAATCAAAACACTGGAATTTCCATTCACAATTCAAGAGTCACAGCTGCATCAGATTTGAGACCAGTTCAAAACTCGGTTAGGACTTATCTTGGAAGACCATGGAAGCAATATTCAAGAACAGTTTTCATGAAGACTTATCTTGATGGCTTGATCAACCCTGCGGGTTGGATGGAATGGAGTGGTAACTTTGCATTAGACACGCTTTATTATGGAGAGTACATGAACACTGGTCCAGGTTCTTCTACTGCTAGACGTGTTAAATGGTCTGGTTATCGTGTCATAACTAGCGCTTCTGAAGCCTCAAAGTTCAGTGTTGCAAATTTTATTGCTGGAAACGCATGGCTACCTTCCACCAAAGTGCCTTTTACCCCTTCTCTTTAA 1548 0.4302 MKAFRLLLALLIPFLLSSFVSGYSWNEVKLWCNQTPNPQPCEYFLSNNPTYQYKPLKQKSDFLKLSLQLAQERALKGHENTLSLGSKCRNPRERVAWADCVELYEQTIRKLNQTLKPNTKLSQVDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVPYQEPSYKEGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGRFTTVSAAINAAPKSSSGRYVIYVKGGVYDEQVEVKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQGITFRNTAGAKNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLRPVQNSVRTYLGRPWKQYSRTVFMKTYLDGLINPAGWMEWSGNFALDTLYYGEYMNTGPGSSTARRVKWSGYRVITSASEASKFSVANFIAGNAWLPSTKVPFTPSL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1169 515 Pfam Pectinesterase 207 501 IPR000070 GO:0030599|GO:0042545
Gso1g1169 515 SMART PMEI_2 23 171 IPR006501 GO:0004857
Gso1g1169 515 PANTHER PECTINESTERASE 7 513 - -
Gso1g1169 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Gso1g1169 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Gso1g1169 515 SUPERFAMILY Pectin lyase-like 201 513 IPR011050 -
Gso1g1169 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Gso1g1169 515 SMART complete 240 418 IPR006633 -
Gso1g1169 515 PANTHER PECTINESTERASE 7 513 - -
Gso1g1169 515 Gene3D - 202 515 IPR012334 -
Gso1g1169 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Gso1g1169 515 CDD PMEI-like_3 30 173 - -
Gso1g1169 515 Pfam Plant invertase/pectin methylesterase inhibitor 27 171 IPR006501 GO:0004857
Gso1g1169 515 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1169 Gso-Chr1 47067878 47070237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1169 1 515 Carbohydrate Esterase AT2G45220 68.147 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1169 K01051 - gmx:100783964 1030.78