Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1166 ATGGCACCACCATTTCCCTTCCTAATGACCCTTCTACTTGCTCCCTTTCTATTCTCCTCCATTGCTTCCTCTTACTCATTCAAAGATATCCAATCATGGTGCAACCAAACCCCTTACCCTCAGCCATGTGAGTACTACTTGACCAACCATGCCTTCAACAAACCCATCAAAAGCAAATCCGATTTCCTCAAAGTTTCCCTTCAGCTAGCCCTAGAGAGAGCACAAAGGAGTGAACTTAACACCCATGCCCTAGGCCCAAAGTGCCGCAATGTCCATGAAAAAGCTGCATGGGCAGATTGCCTTCAACTCTACGAGTACACCATCCAAAGACTAAACAAAACCATTAACCCTAACACCAAGTGCAACGAAACCGACACACAAACATGGCTCAGCACAGCCCTCACAAACCTAGAAACATGCAAAAACGGATTCTATGAACTTGGTGTCCCAGACTATGTCCTACCCTTGATGTCCAATAATGTCACAAAGTTACTAAGCAACACCCTTTCCCTCAATAAGGGTCCTTACCAATACAAACCACCAAGTTACAAAGAAGGGTTTCCAACATGGGTGAAGCCAGGTGATAGAAAGTTGTTGCAATCTTCTTCAGTAGCTTCTAATGCTAATGTGGTGGTTGCAAAAGATGGTTCTGGAAAGTACACAACGGTGAAAGCTGCTGTTGATGCTGCTCCAAAGAGTAGTAGTGGAAGGTATGTGATATATGTGAAGAGTGGGGTGTACAATGAACAAGTTGAGGTAAAAGGAAATAATATAATGCTGGTTGGAGATGGTATTGGAAAGACTATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACAACAACCTTCCGTTCTGCCACTGTTGCTGCCGTGGGTGATGGATTCATTGCTCAAGACATCACATTCAGGAACACTGCAGGAGCAGCAAATCACCAAGCTGTGGCATTCCGTTCTGGCTCAGATCTCTCAGTATTTTACAGATGTAGCTTTGAGGGTTTCCAAGACACACTATATGTTCATTCAGAGAGGCAATTCTATAAAGCATGTGACATCTATGGCACAGTGGATTTCATCTTTGGCAATGCTGCTGCAGTCTTGCAAAACTGCAACATCTATGCAAGAACCCCTCCACAGAGAACCATCACAGTCACAGCTCAAGGCAGAACTGACCCTAACCAAAACACAGGAATCATCATCCACAACTCCAAGGTCACAGGTGCCTCGGGCTTCAACCCTAGTTCAGTTAAGTCATACCTAGGGAGACCCTGGCAAAAGTACTCAAGAACCGTGTTCATGAAAACCTATCTTGATAGCTTGATCAACCCTGCTGGTTGGATGGAATGGGATGGCAACTTTGCCCTAGACACTTTGTACTATGCTGAATATGCAAACACTGGTCCAGGTTCCAACACTGCCAATAGGGTTACTTGGAAGGGTTACCATGTTCTCACTAGTGCTTCTCAGGCCTCACCTTTCACTGTTGGCAACTTTATTGCTGGTAACAATTGGATACCTAGCTCTGGTGTCCCTTTCACCTCAGGGCTTTGA 1548 0.4509 MAPPFPFLMTLLLAPFLFSSIASSYSFKDIQSWCNQTPYPQPCEYYLTNHAFNKPIKSKSDFLKVSLQLALERAQRSELNTHALGPKCRNVHEKAAWADCLQLYEYTIQRLNKTINPNTKCNETDTQTWLSTALTNLETCKNGFYELGVPDYVLPLMSNNVTKLLSNTLSLNKGPYQYKPPSYKEGFPTWVKPGDRKLLQSSSVASNANVVVAKDGSGKYTTVKAAVDAAPKSSSGRYVIYVKSGVYNEQVEVKGNNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYRCSFEGFQDTLYVHSERQFYKACDIYGTVDFIFGNAAAVLQNCNIYARTPPQRTITVTAQGRTDPNQNTGIIIHNSKVTGASGFNPSSVKSYLGRPWQKYSRTVFMKTYLDSLINPAGWMEWDGNFALDTLYYAEYANTGPGSNTANRVTWKGYHVLTSASQASPFTVGNFIAGNNWIPSSGVPFTSGL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1166 515 CDD PMEI-like_3 32 173 - -
Gso1g1166 515 PANTHER PECTINESTERASE 5 514 - -
Gso1g1166 515 Gene3D - 203 515 IPR012334 -
Gso1g1166 515 SMART PMEI_2 25 171 IPR006501 GO:0004857
Gso1g1166 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 173 IPR035513 -
Gso1g1166 515 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Gso1g1166 515 Pfam Pectinesterase 209 501 IPR000070 GO:0030599|GO:0042545
Gso1g1166 515 SUPERFAMILY Pectin lyase-like 203 514 IPR011050 -
Gso1g1166 515 PANTHER PECTINESTERASE 5 514 - -
Gso1g1166 515 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Gso1g1166 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 174 IPR035513 -
Gso1g1166 515 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 173 IPR006501 GO:0004857
Gso1g1166 515 Pfam Plant invertase/pectin methylesterase inhibitor 29 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1166 Gso-Chr1 46959943 46964227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1166 7 515 Carbohydrate Esterase AT2G45220 67.515 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1166 K01051 - gmx:100782892 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1166 1 46959943 46964227 Gso3g0233 3 3181122 3184678 GST