Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1163 ATGCAATTCAGGCTCGGCAGGCGCGTTGTAAGGGTTGCTAAATGGGTCTTCGGTCGGGTCAGGATCAAAACCCGACCCGGGTACCACCACCGTCTCGGTTCTGGTTCGTCCCATTTGAGAAATCCCATAATAAAGCTTCTCACCTGGGGGCAAAAATTAAAGAGAGGAGCGAAGACCCTATGCGGGAAAAAAGGGTCGGGTTATCTTCCAATCGGGTCGGATCCGGCTTGCGACAGGGCTCCGGCGGTGCCAAAGGGGCACTTGGCGGTGTACGTGGGGGAGGAGGACGGCGAGTTCCGGCGAGTGTTGATTCCGGTGATTTACTTCAACCACCCTTTGTTCAGTGATTTGCTGAGGGAAGCAGAAAAAAAGTTCGGGTTTGAACACCCCGGTGGGATCACGATTCCGTGTCGACTCACCGAGTTTGAACGGGTCAAGACCCGGATCGCGTCCGGGTCGGGTCAGCGCGGGAGGACCCGGAGATTGGGGTGGCGGCTACATTATTAA 507 0.5621 MQFRLGRRVVRVAKWVFGRVRIKTRPGYHHRLGSGSSHLRNPIIKLLTWGQKLKRGAKTLCGKKGSGYLPIGSDPACDRAPAVPKGHLAVYVGEEDGEFRRVLIPVIYFNHPLFSDLLREAEKKFGFEHPGGITIPCRLTEFERVKTRIASGSGQRGRTRRLGWRLHY* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1163 168 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 3 159 IPR003676 GO:0009733
Gso1g1163 168 Pfam Auxin responsive protein 78 146 IPR003676 GO:0009733
Gso1g1163 168 PANTHER SMALL AUXIN-UP RNA-RELATED 3 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1163 Gso-Chr1 46929716 46931037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1163 81 142 Calmodulin-binding Proteins AT3G43120 51.613 2.30e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1163 K14488 - gmx:100808164 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1163 1 46929716 46931037 Gso1g1163 1 46929716 46931037 ECH
Gso1g1163 1 46929716 46931037 Gso3g0236 3 3248334 3249841 GST