Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1160 ATGTCCTCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCACCAGCTTGTTCAAGACTGTCACTGTGAGATGTGGTCATTGCACCAATCTTCTCTCAGTCAATATGCGTGGACTGCTTCTCCCTAGTGCCAATCAGCTTCACCTTGGCCACAGCTTCTTCACTCCTCAAAATCTTCTGGAGGAGATTCGTAATGCACCTTCAACAAACATGATGATGAATCAACTGCCGAACCCTAATGATTTGGTCATGAGCACCATGAGAGGGGGACCTGAAGAAACCCCTAAGCCTCCATCAGCTAATAGACCTCCAGAGAAGAGACAGCGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATAATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGACGTGCTTATGAAAGATGGGTTTTTCGCACCGGCTAATGTAGGCGTCTCTCCCTACTAG 648 0.4846 MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHSFFTPQNLLEEIRNAPSTNMMMNQLPNPNDLVMSTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDNQPVKKANVRQEAEDVLMKDGFFAPANVGVSPY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1160 215 Gene3D High mobility group box domain 116 197 IPR036910 -
Gso1g1160 215 Pfam YABBY protein 16 179 IPR006780 GO:0007275
Gso1g1160 215 PANTHER PROTEIN YABBY 6-RELATED 1 213 IPR006780 GO:0007275
Gso1g1160 215 PANTHER PROTEIN YABBY 4 1 213 - -
Gso1g1160 215 SUPERFAMILY HMG-box 120 172 IPR036910 -
Gso1g1160 215 MobiDBLite consensus disorder prediction 110 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1160 Gso-Chr1 46800854 46804144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1160 27 213 C2C2-YABBY Transcription Factor Family AT4G00180 64.115 3.23e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso1g1160 YABBY 8.3e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1160 K25796 - gmx:100781267 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1160 1 46800854 46804144 Gso1g1160 1 46800854 46804144 ECH
Gso1g1160 1 46800854 46804144 Gso3g0238 3 3296412 3299510 GST