Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1140 ATGGAGAAGCACAAGTGCAAGCTTTGCTTGCGGAGTTTCGCGAACGGAAGAGCGTTGGGAGGTCACATGCGGTCTCACATGCTGAACCTACCTGTTCCTCCGAAACAGAGCGAGTTCGTGCCGATTCAACTCAGCTTCGAGGCCGACTCATCTCCTTCGCAGTCTTCATCTTCCTTCTACGGTCTCAGAGAGAATCCGAAGAAGAGCTTTCGTTTCGCAGATCCTGAATTTGCGTTTGCAGCAGCAGACACGGGCTCGGTGATCCTGCAGGACAGGGAGAGCGAGACCGAGTCGTCGAGGAATCCGACTAGGACACGATCCAAGAGAGCGTGGCAACTCGGTGGCGACGGTGGTGGCGGTGGCGGCGGTTCAGGTGAATCAGAAAAAAAGATTATGAAAGTTTGTAAAATTAGTAAAACTAACGAATCTGCAAGTTCGGTTTCGGACACGACGAGGGAGGAAGACGTCGCATTCTGTCTCATGATGCTGTCTCGCGACAAGTGGAAGGAGGAAAATATTAACAATTTATTATATGATCATGATCAGGATGATGATGAAGACGAGGAGGACGATGAAGAAGACGAAAACAATGAGGACGATGACGGTTACGAATCGGAAGAGAAGTCTCTTAAGAAGAGCAACAACAAGGTGCGAGGGAGGTACAAATGCGAGACGTGTGAAAAGGTGTTTCGATCTTACCAGGCTCTCGGAGGACACCGCGCCAGTCACAAGAAGATCAAGCTCAACAACAACAACAACAACAACAACAACAACGAAGGTGAACTCGAAGTTCAGCACGTTGTTGTGGAGAAGAAAATCCACGAATGTCCTGTTTGTTTCCGAGTATTCGCTTCCGGTCAGGCTCTGGGTGGACACAAGAGAACACATGTGATTGGTTCTTCAACTGCTGCAACAACCGTTTCTGTTAGAAGTTCTGTTGCAACGGTTTCGGTTAGAACAGCTTCTACTACTAGAGTTGGAGATAGTTTGATAGATCTCAATCTTCCTGCTCCAGTGGATGATGATGAAGAGGAGGAGGAGGATGTTAGTCAGTTCGACGACTCAGCTGTTTCGGATGCAGAGTTTGTTAAACTGTGA 1098 0.4827 MEKHKCKLCLRSFANGRALGGHMRSHMLNLPVPPKQSEFVPIQLSFEADSSPSQSSSSFYGLRENPKKSFRFADPEFAFAAADTGSVILQDRESETESSRNPTRTRSKRAWQLGGDGGGGGGGSGESEKKIMKVCKISKTNESASSVSDTTREEDVAFCLMMLSRDKWKEENINNLLYDHDQDDDEDEEDDEEDENNEDDDGYESEEKSLKKSNNKVRGRYKCETCEKVFRSYQALGGHRASHKKIKLNNNNNNNNNNEGELEVQHVVVEKKIHECPVCFRVFASGQALGGHKRTHVIGSSTAATTVSVRSSVATVSVRTASTTRVGDSLIDLNLPAPVDDDEEEEEDVSQFDDSAVSDAEFVKL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1140 365 ProSitePatterns Zinc finger C2H2 type domain signature. 223 243 IPR013087 -
Gso1g1140 365 Gene3D Classic Zinc Finger 218 296 - -
Gso1g1140 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 248 IPR013087 -
Gso1g1140 365 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gso1g1140 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 296 IPR013087 -
Gso1g1140 365 ProSitePatterns Zinc finger C2H2 type domain signature. 276 296 IPR013087 -
Gso1g1140 365 MobiDBLite consensus disorder prediction 88 127 - -
Gso1g1140 365 MobiDBLite consensus disorder prediction 177 214 - -
Gso1g1140 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gso1g1140 365 MobiDBLite consensus disorder prediction 337 354 - -
Gso1g1140 365 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 365 IPR044303 GO:0006355
Gso1g1140 365 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 365 - -
Gso1g1140 365 SUPERFAMILY beta-beta-alpha zinc fingers 220 296 IPR036236 -
Gso1g1140 365 MobiDBLite consensus disorder prediction 333 365 - -
Gso1g1140 365 SMART c2h2final6 221 243 IPR013087 -
Gso1g1140 365 SMART c2h2final6 4 26 IPR013087 -
Gso1g1140 365 SMART c2h2final6 274 296 IPR013087 -
Gso1g1140 365 Pfam C2H2-type zinc finger 220 245 - -
Gso1g1140 365 Pfam C2H2-type zinc finger 274 296 - -
Gso1g1140 365 Pfam C2H2-type zinc finger 4 27 - -
Gso1g1140 365 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1140 Gso-Chr1 46036364 46037816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1140 1 343 C2H2 Transcription Factor Family AT3G60580 44.915 3.49e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso1g1140 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1140 - - gmx:100776462 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1140 1 46036364 46037816 Gso3g0272 3 3860994 3862702 GST