Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1136 ATGAGTCAACGTGTCCCTAACTGCGATGTGGACGACAGCAACATTCCCACAGCATCAAAATTCCCTCTTCCCAATTTCAATTTCATATCCCATGAAGTCCCAATGTTGGGCTACCAAGTTGGGGAACTACCATGCAAAAAGGGACAACCTTCGACGTACGAAGGCAGCAACGGGAACCTAACTACATGGGACAAACCTCGTACAAGTGGTGGTACCTTGGAGTCCATAGTTAACCAACATGTCAGCGAAAACTGCTATAAATTGGTTGCTATGGACGCATTAGTGCCCTGTTCGAAACAGGGCACACGCAAGGCAGTGGAGTCGGGAAGGCTTGGTGCGTGCCGAGAAAGTAGTTCCACGCGCGTGGCGTCGCGTGCCAGGGTGGCGGCGCAGGAGGAAGTGGGGAAACGCGCTGGGATGGTGGCGCGTTTGCCTACAACGCTAGAATTGAGTGGCTGCAAGGATTGGAGCGTGAGTGGTAGTGAAACTTGTCGTAGGGAATTGAGTGTGACTTTCAATTCTGCCACCACGGGTTCGCCGGAAAACACCACTAGCGCCGGCAGACAGTGCACCGGGACCACTACCAACGACGACCGTGATTCCATCAGCCACCTTATATCTCAGAGCGAGGTACCGGATGAGGATTACATGGCAGCAAAAGTTGAAAGATCATCTGGGTCCAACAAAAGAATCAAAGCTAATTCAGTTGTGCACAACCAATCTGAAAGGAGAAGAAGGGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAGCTGGTCCCAAATTCCAGTAAGACCGATAAAGCTTCGATGCTAGATGAGGTGATCCAATATATGAAGCAATTGCAAGCCCAAGTGCAAATGATGAATTGGATGAAAATGTACACCACCATGATGCTGCCAATTACCATGCAGCAACAACAACAACAACTTAAAATGTCTATGATGATGGCTCAGATGGGCATGGGCATGGGGATGGGCATGGGAATGAATAAGGATATGGTTATGAATATGAACAGCATGAACATTCCCGGCATTCCCCCTATGCTCCCCTTTCCCCCCTTCATGCCTATGGTCTCATGTGGTGATCAATTACAAGGAACACCAGAGAAGTCCGTGACCATGGATGCATACAGTAAGATGGCTTCCCTGTATGATCAGCAGCTGTTTCATCCTCCAGCTTCTAGTTCCAAGAACTGA 1200 0.4867 MSQRVPNCDVDDSNIPTASKFPLPNFNFISHEVPMLGYQVGELPCKKGQPSTYEGSNGNLTTWDKPRTSGGTLESIVNQHVSENCYKLVAMDALVPCSKQGTRKAVESGRLGACRESSSTRVASRARVAAQEEVGKRAGMVARLPTTLELSGCKDWSVSGSETCRRELSVTFNSATTGSPENTTSAGRQCTGTTTNDDRDSISHLISQSEVPDEDYMAAKVERSSGSNKRIKANSVVHNQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAQVQMMNWMKMYTTMMLPITMQQQQQQLKMSMMMAQMGMGMGMGMGMNKDMVMNMNSMNIPGIPPMLPFPPFMPMVSCGDQLQGTPEKSVTMDAYSKMASLYDQQLFHPPASSSKN* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1136 399 MobiDBLite consensus disorder prediction 222 245 - -
Gso1g1136 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 282 IPR011598 GO:0046983
Gso1g1136 399 Gene3D - 228 294 IPR036638 GO:0046983
Gso1g1136 399 SMART finulus 239 288 IPR011598 GO:0046983
Gso1g1136 399 MobiDBLite consensus disorder prediction 174 200 - -
Gso1g1136 399 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 38 399 IPR031066 -
Gso1g1136 399 PANTHER TRANSCRIPTION FACTOR UNE10-LIKE 38 399 - -
Gso1g1136 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 302 IPR036638 GO:0046983
Gso1g1136 399 Coils Coil 239 259 - -
Gso1g1136 399 Pfam Helix-loop-helix DNA-binding domain 237 283 IPR011598 GO:0046983
Gso1g1136 399 CDD bHLH_AtPIF_like 237 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1136 Gso-Chr1 45875109 45879065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1136 1 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.009 3.13e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g1136 HLH 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1136 - - gmx:100820284 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1136 1 45875109 45879065 Gso3g0278 3 3946747 3950723 GST