Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1130 ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCGCCACCTCGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGCGATAAGTGCGGTTCTGCTTATGAGCAATCAACGTATTGTGATATGTTCCACTCAAATGATTCTGGTTGGAGAGAATGCACTTCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGGAAGGAATTCAGGACCGCAACCTATTGCAAGCAATGAAAAGCCTAATGGATCTGGGACATCAAAAGTACAAAATGTCAGTACACAGCAGCAGTGCACATCTCTGGCTAACCAATTAACTGTGAGGGGTATGCAAGTAGGGCATTATGCAGAGAATGATGAGCTTCAGTGCTGGTTCAAAACTCACAACGTTGAAACAGATGGGCCTTTTGCAGAAATGAAACCAGAAATTTTACCCTCAGTTGGAGAACTTGGAAACACATTGATATCACAATTTCATTGTGAGTCTAATGGATCGTCTAAGGCTTCCAAAGCAGAGAACTGTAAGCCAGAGACAGAAATGCGAGATATATATGAATCATTGGCACAGACAAATTTGAGTATGACCCTTGCTGCTCCTTTAGGAAATTCAAATCCCTTTCATAGTGCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTCCACTTTTATTGGGGTCAAGGTCTCACCATCTTTTACCTAAGCCTGCTAGGTCAACTATTGGGACAAGCTTAGAAGCAAATGCTGGCATGGTATCGCAGATTCGTGTAGCAAGACCACCTGCTGAAGGACGGGGAAGGAATCAATTGCTTCCACGTTATTGGCCTAGGATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCTACAATCGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACTGCAGTACAGTTACAAAAGGGATGTTCAGAAACCCACCTAAATGCGCTGTCTAAAAAATGGAACTCAGCTGGTGGTGACATGAGTTGGCATAACATTGACATGCCTGAAAGCAGAAAAAGAGATGAGTTGCCGTTGCCACCTGTGATGGTTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAAGATATGCTCCGTCCACCTCCTACTGTTAAGCCAAGCATTGTCATGATCGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAACTGGGGTAAACGAGCAGTGGACGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCTGTTGATGTACTTACTCCCCCAAAGTGGACATGTGTGGAGAACTTATGGGATCAGAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGCTGAATAAAGAATTCAAGAAACAAAGACTGGCAGCAAGCCAGAGACTGGCCCTGGAACATGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTGGGTGATGATGCAAGTGACTCTGGCAGGACATCAGTTGTTAGCACCACAAAACATCCTCGGCATAGACCTGGGTGCTCTTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCCACATGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGGCAATCCGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGTTATCATGGCGGACCAAAGATGAATCAGAAGTAGATAGCACCTTACGACATTTAACTCCAGTTGACAGATTGGAGAATGAGGTACGGGTGCAAAATGAATTGGATTCAAGGAGTCAAAACCATGCTGTGGCTGAAGCTGCCAAGGGACAATTAGATTTGAATTGTCAACCTGATCGAGAAGATGTGCAAGCTTGGCCGAACAATTTGAGCATGACGAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAAACCTACCTAAAGCGAAATGGCCTTAGTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAAGCACAGACAACCAATGATAGTGAGGGAAAACACAATGAGGATTGTGGAACCGCTTTGGTTATTCATGAGAGGGAAAGCAGTCCTGAAGAGAACAGTGGGCAAGACAGAGAGCAAAACAATTCACTCTCATGA 2619 0.4433 MESRSCMNVACATSTTIRWRKGWALRSGEFADLCDKCGSAYEQSTYCDMFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCGRNSGPQPIASNEKPNGSGTSKVQNVSTQQQCTSLANQLTVRGMQVGHYAENDELQCWFKTHNVETDGPFAEMKPEILPSVGELGNTLISQFHCESNGSSKASKAENCKPETEMRDIYESLAQTNLSMTLAAPLGNSNPFHSAVVDEREQSKTSPLLLGSRSHHLLPKPARSTIGTSLEANAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAVQLQKGCSETHLNALSKKWNSAGGDMSWHNIDMPESRKRDELPLPPVMVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDMLRPPPTVKPSIVMIEDHVFEEYEEPPVFGKRSIFVVRSTGVNEQWTQCDSCSKWRKLPVDVLTPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRLALEHESSGLDALANAAILGDDASDSGRTSVVSTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDSTLRHLTPVDRLENEVRVQNELDSRSQNHAVAEAAKGQLDLNCQPDREDVQAWPNNLSMTSLLEEANLPLETYLKRNGLSSLISEQQTNSASNVQAQTTNDSEGKHNEDCGTALVIHERESSPEENSGQDREQNNSLS* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1130 872 Pfam CW-type Zinc Finger 556 598 IPR011124 GO:0008270
Gso1g1130 872 Gene3D - 554 610 - -
Gso1g1130 872 Pfam B3 DNA binding domain 322 421 IPR003340 GO:0003677
Gso1g1130 872 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 824 - -
Gso1g1130 872 SMART B3_2 322 422 IPR003340 GO:0003677
Gso1g1130 872 MobiDBLite consensus disorder prediction 819 835 - -
Gso1g1130 872 MobiDBLite consensus disorder prediction 819 872 - -
Gso1g1130 872 CDD B3_DNA 320 421 IPR003340 GO:0003677
Gso1g1130 872 SUPERFAMILY DNA-binding pseudobarrel domain 319 422 IPR015300 -
Gso1g1130 872 ProSiteProfiles Zinc finger CW-type profile. 551 601 IPR011124 GO:0008270
Gso1g1130 872 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 824 - -
Gso1g1130 872 MobiDBLite consensus disorder prediction 836 861 - -
Gso1g1130 872 ProSiteProfiles B3 DNA-binding domain profile. 322 423 IPR003340 GO:0003677
Gso1g1130 872 Gene3D - 300 427 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1130 Gso-Chr1 45757484 45765495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1130 1 841 B3 DNA Binding Superfamily AT4G32010 51.636 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso1g1130 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1130 - - gmx:100789085 1785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1130 1 45757484 45765495 Gso3g0303 3 4529913 4538383 GST