Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1118 ATGGGGAATCACAGGTTTAAGTTATCAGATATGATTCCAAATGCTTGGTTTTACAAGCTGAGGGACATGAGGGACATGGGTAGAGGAAGAGATTCAAGAAAGCATAGCACCACGCCCTCTAGGAAAAAGAAGCAAACTTCACCCCCTTCAACCACACATTCATCAAAACCAAACCAACCCCACCAACAATACAACAACAATATCTCTAGAAAGTCCTATTACTTCACAAGAGACCTCAAAACCTCACCCTCAAACACCCCAAAAATCATTTCTTCTCCTAGAAAATCAACCAAACTAAGAACCAAAAGAAGAACACCGAGAACCCCAAAACTTGTCTCCTCAGGTTGTAGCTGCCGCACCACCCTTGAATCAGTGTGGACCAAATCAGATTCACATTCACCACAAGAACACTCTTCCTCATCCCCATTTGACACCTCTCCCGAGTCACAATCCCCAGAAATCAGAACAGACCGTATTCTTCTTCCATGTTCTTCATCATTCGATGAAATGGTGTCCTTGTCCACCACCTCTTGTGCCTCTTGCAGGCTTAACACAAACATAAACACCACCACCAACAACGACACCATCATAGACGTGGACAAAAACTTCATAGCAAGAAAAGATAACAAGCTTGATGGCTACTACAATTACAACACCAACAACAATGGCTATGATGACACCTTCTCAGAACTTGAGCTTCCTCCAATCATAACCAAGCCATCCAAGTTGCTAAAGAAGAGAGAACTCAAACAAGGGTCCTTGAAGGTGAGAATTGTGAAGGAACAAGACTCTGAAATGAAGGAACAGAGGAATAGTGGTTCTTTGAAGAGGCTATCTCTGAGTTCTCCCGGGGGGAGGTTGAGGATCCACTCGCCGAGAATTGCTGGCCGGAGGGGCCGGAAAAGCGTGTCGTCGACAGCGAGTTCTGGCTCCCGGAGAAGCCTCTCCGATAGCTTTGCGGTTGTGAAGTCATCCTTTAACCCACAGAAGGATTTCATGGAGTCCATGATGGAGATGATTGTGGAGAACAACATAAGGGCATCCAAGGACTTGGAAGATCTACTTGCTTGCTACCTTTCTCTTAATTCAGATGAGTATCATGACCTCATCATCAAGGTGTTCAAGCAAATTTGGTTTGATTTGACTCAACCAAGGTAG 1158 0.4473 MGNHRFKLSDMIPNAWFYKLRDMRDMGRGRDSRKHSTTPSRKKKQTSPPSTTHSSKPNQPHQQYNNNISRKSYYFTRDLKTSPSNTPKIISSPRKSTKLRTKRRTPRTPKLVSSGCSCRTTLESVWTKSDSHSPQEHSSSSPFDTSPESQSPEIRTDRILLPCSSSFDEMVSLSTTSCASCRLNTNINTTTNNDTIIDVDKNFIARKDNKLDGYYNYNTNNNGYDDTFSELELPPIITKPSKLLKKRELKQGSLKVRIVKEQDSEMKEQRNSGSLKRLSLSSPGGRLRIHSPRIAGRRGRKSVSSTASSGSRRSLSDSFAVVKSSFNPQKDFMESMMEMIVENNIRASKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTQPR* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1118 385 Pfam DNA-binding domain 1 48 IPR025830 GO:0003677
Gso1g1118 385 MobiDBLite consensus disorder prediction 262 312 - -
Gso1g1118 385 MobiDBLite consensus disorder prediction 27 115 - -
Gso1g1118 385 ProSiteProfiles OVATE domain profile. 321 380 IPR006458 -
Gso1g1118 385 Pfam Transcriptional repressor, ovate 325 381 IPR006458 -
Gso1g1118 385 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 319 382 IPR006458 -
Gso1g1118 385 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 383 IPR038933 GO:0045892
Gso1g1118 385 MobiDBLite consensus disorder prediction 127 153 - -
Gso1g1118 385 MobiDBLite consensus disorder prediction 42 94 - -
Gso1g1118 385 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 3 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1118 Gso-Chr1 45357284 45359170 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gso1g1118 Ovate 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1118 - - gmx:100785362 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1118 1 45357284 45359170 Gso3g0313 3 4695841 4697485 GST