Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1116 ATGGCGATTTCTCCTGAAACGTTCCCAACCCGAAAACGACGACCCGAAAACATGGCGTCGTTTATGTCTCCGAAGATAAACGACCTTAACGTTTTGTGCTCCTTGCTTCAACTCACGGACCAGATATGTTCCCTAAACCTCACAACCACCCTCTTGAACCGTGTTTCCTCTTCCACCATCCGCAAAACGCAGCTCCTAGGTGTCGTTTTCGAGGAGCTCGTTCGCGTTTCAAATCTGAACTCCAATTCTTCCGTTCTATTCCTCTGCCTCGAGGAAATGTACATCGTTCTGCACAATATCAAAATCCTAATCGAAGATTTCTCCAACGGAAGCAAGTTCAATTTGCTCATGCAGATCGAAACCGTGGCTGATAATTTCCACAGGCTCACCGGAGAACTCTCCACGCTCCTCGACGTGCTCCCTCTCCAAGAGCTCGACCTAAACGACGACGTTAGGGAACTCGCTCTCCTCGTCAGAAAACAGGGCTCGGAAGCGAAGGCGTTCATCGGAGCCGAACAAATCAGCCTCCGGAACGACGTCGTTTTCGTGCTCGACCGGATCAAGAACGAGATCGTCCCCGATCAAGCGCATCTAGCTTCGATCTTCGAGAAGTTGGAGATTCGCGACGCGTCGAGCTGCAGAGCGGAGATCGAGAGCCTCGAAGAGGAGATTCACAACCGTAGCGAAGAACAACCGAAAACGGATCTCGTCGCGTTGATCGGCCTCGTCCGTTTCGCGAAGTGCGTTCTTTACGGCGCGTCAACGCCGTCGCAGAAGACCGTCACTATGCGGCGGAATCAGTCGTTGGAGCTAACAATTCCTGCGGATTACCGGTGCCCGATAAGCCTAGAGCTCATGCGCGATCCCGTCGTGGTGGCGACAGGACAGACGTACGATCGTGCATCGATCAAGCTCTGGATGGATTCAGGACACAACACGTGTCCAAAAACGGGTCAAACGCTATCACACACCGAGCTAATCCCCAATCGCGTGCTGCGGAACATGATAGCAGCGTGGTGCCGCGAGCAGAGAATCCCCTTCAAAGTAGAAACGGTTACAGGGAAACACAACAGCGGAGTTACCAACAAAGCCGCATTAGAAGCCACGCGAATGATGGTGTCATTTTTGGTCAACAAGCTCAAGGGAAATGGACATGGAAAGGAAGATAATGATAACGTTAACGTTCCTTTGAGTGTTGAAGACGCAAACGGCGTCGTTTACGAGCTTCGGGTGTTGGCGAAGACAGATTCGGGTAGCCGAGCCTGTATAGCCGAAGCGGGAGCGATTCCACTATTGGTTCGGTTCCTTAATGCGGAGGAGAATCCGAGCCTGCAGGTTAACGCCGTGACGACGATTTTGAACTTGTCTATATTGGAAGCGAACAAGACTAAGATAATGGAGACTGACGGCGCGTTAAACGGCGTCGCAGAGGTTTTGATTTCGGGTGCCACGTGGGAGGCGAAGGCGAACGCGGCGGCGACGGTGTTTAGCTTGTCGGGTGTGGCGGCGCACAGGAGGAGGCTGGGGAGGAAGACACGTGTCGTGAGCGGGTTGGTGGGGTTGGCGAAGACTGGGCCAGAGGGGGCAAGGAGGGACGCGCTGGCAGCAGTGTTGAATTTGGCGGCGGATAGGGAGACGGTGGCGAGGTTGGTGGAGGGGGGTGTGGTCGGGATGGCGGCAGAGGTGATGGCGGCGATGCCGGAGGAGGGGGTGACGATTCTGGAGGCGGTGGTGAAGAGGGGTGGGTTGGTGGCGGTGGCGGCGGCGTATGCCGGGATTAAGAGGCTAGGGGCGGTTCTGAGGGAGGGGTCAGAGAGGGCGAGGGAGAGCGCGGCGGCGACGCTGGTGACAATGTGTCGGAAGGGGGGGTCGGAGGTTGTGGCGGAGCTGGCGGCGGTGCCCGGCGTGGAGAGGGTTATTTGGGAGCTCATGGCAGTTGGGAGTGTCAGGGGGCGGCGGAAGGCGGCGACGTTGTTGAGGATTATGCGGCGGTGGGCGGCCGGGATCGATGGTGGAGAGAATGAAGGGTTCACGACAACTACTACTACCATGGTTGCTTCCTCAACTACTATGGTTGTTCCAACCACCACCTCTTCGTTAGCACAGTAA 2109 0.559 MAISPETFPTRKRRPENMASFMSPKINDLNVLCSLLQLTDQICSLNLTTTLLNRVSSSTIRKTQLLGVVFEELVRVSNLNSNSSVLFLCLEEMYIVLHNIKILIEDFSNGSKFNLLMQIETVADNFHRLTGELSTLLDVLPLQELDLNDDVRELALLVRKQGSEAKAFIGAEQISLRNDVVFVLDRIKNEIVPDQAHLASIFEKLEIRDASSCRAEIESLEEEIHNRSEEQPKTDLVALIGLVRFAKCVLYGASTPSQKTVTMRRNQSLELTIPADYRCPISLELMRDPVVVATGQTYDRASIKLWMDSGHNTCPKTGQTLSHTELIPNRVLRNMIAAWCREQRIPFKVETVTGKHNSGVTNKAALEATRMMVSFLVNKLKGNGHGKEDNDNVNVPLSVEDANGVVYELRVLAKTDSGSRACIAEAGAIPLLVRFLNAEENPSLQVNAVTTILNLSILEANKTKIMETDGALNGVAEVLISGATWEAKANAAATVFSLSGVAAHRRRLGRKTRVVSGLVGLAKTGPEGARRDALAAVLNLAADRETVARLVEGGVVGMAAEVMAAMPEEGVTILEAVVKRGGLVAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVAELAAVPGVERVIWELMAVGSVRGRRKAATLLRIMRRWAAGIDGGENEGFTTTTTTMVASSTTMVVPTTTSSLAQ* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1116 702 Coils Coil 210 230 - -
Gso1g1116 702 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Gso1g1116 702 Pfam U-box domain 273 344 IPR003613 GO:0004842|GO:0016567
Gso1g1116 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 470 IPR000225 GO:0005515
Gso1g1116 702 SUPERFAMILY RING/U-box 268 345 - -
Gso1g1116 702 Gene3D - 361 666 IPR011989 -
Gso1g1116 702 SUPERFAMILY ARM repeat 398 662 IPR016024 -
Gso1g1116 702 Pfam Armadillo/beta-catenin-like repeat 417 456 IPR000225 GO:0005515
Gso1g1116 702 SMART arm_5 416 457 IPR000225 GO:0005515
Gso1g1116 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 351 IPR013083 -
Gso1g1116 702 PANTHER U BOX DOMAIN-CONTAINING 13 681 - -
Gso1g1116 702 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 13 681 - -
Gso1g1116 702 CDD RING-Ubox_PUB 277 319 IPR045210 -
Gso1g1116 702 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1116 Gso-Chr1 45342160 45344658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1116 9 697 U-box Gene Family AT5G01830 55.636 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1116 - - gmx:100784832 1261.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1116 1 45342160 45344658 Gso3g0314 3 4703391 4705933 GST