Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1115 ATGGAGCAAAAAGGAGGTGTGCTTATGCAACGATATGAACTGGGGAGATTATTAGGCCAAGGAACCTTTGCGAAGGTTTACCATGCTAGAAACATCATAACTGGCATGAGTGTGGCCATTAAGATTATTGATAAGGAGAAGATTCTGAAAGTTGGGATGATTGATCAGATTAAGCGTGAAATTTCAGTGATGAGGCTAATCAGGCATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCAGCAAAACCAAAATTTACTTTGTCATGGAGTATGTAAAAGGCGGTGAGCTCTTCAACAAGGTGTCCAAAGGAAAGCTCAAGCAGGATGATGCTAGGAGATATTTTCAGCAATTGATCAGTGCTGTTGACTACTGCCATAGCAGAGGCGTGTGCCATCGCGATCTGAAACCAGAAAATCTTCTACTGGATGAAAACGGGAATTTGAAGGTCACAGATTTCGGGTTAAGTGCCCTTGCTGAAACTAAGCACCAAGATGGATTACTCCATACTACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAGGGGTTATGATGGAGCCAAAGCTGATATATGGTCATGTGGGGTGATCTTGTATGTTCTATTGGCTGGTTTTCTTCCATTTAGAGACTCTAATCTGATGGAGATGTACAGGAAGATTGGCAGGGGAGAATTCAAATTTCCTAACTGGTTTGCACCGGATGTACGCAGATTGCTGTCGAAAATCTTGGATCCAAACCCAAAGACAAGGATATCAATGGCCAAAATTATGGAAAGTTCTTGGTTCAAAAAGGGGTTAGAGAAGCCTACCATTACTCAGAATGAAGATGAAGAACTGGCTCCTCTCGATGCTGATGGAGTATTTGGAGCTTGTGAGAATGGAGATCCTATTGAACCGGCAAAAAACTCAAAGCCTTGTAATAATTTAAATGCTTTTGACATCATCTCCTATTCCTCGGGTTTTGACTTGTCTGGTTTGTTCGAGGAGACCGATCGAAAGAAAGAAGAGCGGTTTACATCCGACAAGCCAGCCTCAATCATCATCTCCAAGTTGGAAGAAATTTGCAGGCGTCTTCGGCTGAAAGTGAAAAAGAAAGATGGGGGTTTGTTCAAGTTGGAAGGTTCCAAGGAAGGAAGAAAAGGGCCATTGGGTATCGATGCAGAGATTTTTGAGATCACCCCAGTCTTCCATCTGGTTGAGTTAAAAAAATCTAGTGGAGATACATTGGAGTACCAAAAGCTTTTGAAACAGGAAGTTAGGCCTGCACTTAAGGACATTGTTTGGAACTGGCAAGGAGAACAACCACAACCATTGCAACATGGAGTGGTGCAGAAAGAGGAACAACCTTCTTATCCTGGCATATCAGAGGTTGTGCCACAATCAACTGCGTAA 1404 0.4288 MEQKGGVLMQRYELGRLLGQGTFAKVYHARNIITGMSVAIKIIDKEKILKVGMIDQIKREISVMRLIRHPHVVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKQDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKVTDFGLSALAETKHQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILYVLLAGFLPFRDSNLMEMYRKIGRGEFKFPNWFAPDVRRLLSKILDPNPKTRISMAKIMESSWFKKGLEKPTITQNEDEELAPLDADGVFGACENGDPIEPAKNSKPCNNLNAFDIISYSSGFDLSGLFEETDRKKEERFTSDKPASIIISKLEEICRRLRLKVKKKDGGLFKLEGSKEGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYQKLLKQEVRPALKDIVWNWQGEQPQPLQHGVVQKEEQPSYPGISEVVPQSTA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1115 467 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1115 467 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1115 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gso1g1115 467 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 447 - -
Gso1g1115 467 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
Gso1g1115 467 Gene3D Kinase associated domain 1, KA1 311 433 - -
Gso1g1115 467 CDD CIPK_C 314 428 - -
Gso1g1115 467 Gene3D Transferase(Phosphotransferase) domain 1 3 310 - -
Gso1g1115 467 SUPERFAMILY Protein kinase-like (PK-like) 8 278 IPR011009 -
Gso1g1115 467 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Gso1g1115 467 MobiDBLite consensus disorder prediction 442 467 - -
Gso1g1115 467 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1115 467 CDD STKc_SnRK3 11 265 - -
Gso1g1115 467 Pfam NAF domain 311 368 IPR004041 GO:0007165
Gso1g1115 467 PANTHER - 2 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1115 Gso-Chr1 45291069 45294895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1115 1 440 CBL-interacting serine-threonine protein kinases AT5G58380 66.300 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso1g1115 Pkinase 2.9e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1115 K07198 - gmx:100815651 942.184