Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1109 ATGGCCTCATCTAGCTACTCTAACTCTCCTTGTGATGCCTGCAAGTTCTTAAGAAAATGCATGATGGATTGCATTTTCTCCCCATATTTCCCTCCAAAAGAGCCTCAGAAGTTCGCCAATATGCACAAGATATTTGGAGCATGCAACGTGAGCAAGCTTCAAAATGAGGTGCAGCCCTACCAGAGGGAGGATGCAGTGAACTCACTGGCCTATGAAGCCGAGGCATGGATAGAGGATCCGGTTTATGGTTGTGTTGGGGCAATCTCAGTGCTATTAAAAGTGCAAATATTGCACCAACACAGGGAAAGAACCTTTGTCCAAATGTAA 327 0.4526 MASSSYSNSPCDACKFLRKCMMDCIFSPYFPPKEPQKFANMHKIFGACNVSKLQNEVQPYQREDAVNSLAYEAEAWIEDPVYGCVGAISVLLKVQILHQHRERTFVQM* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1109 108 ProSiteProfiles LOB domain profile. 9 108 IPR004883 -
Gso1g1109 108 Pfam Lateral organ boundaries (LOB) domain 10 93 IPR004883 -
Gso1g1109 108 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 100 - -
Gso1g1109 108 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1109 Gso-Chr1 45187972 45188298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1109 4 102 AS2 family AT3G27650 72.000 2.10e-49 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso1g1109 LOB 3.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1109 - - gmx:100782694 229.565