Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1101 ATGGATTCTAGGCGGCGTGGTAAAAACGCATCTATGCAACGCAAGTTGCAACAACTTCGATCGGTTACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGCTGAAGCAAAAAGTGGATGGATTGAACTCAGAGCTAGGAACCGCGGAATCATCAATCTCCCAAGACGAACTACCCATGGTCACTGTAGAAACCCTAGAAAGGGGATTCCTCATTAATGTGTTTTCAGAAAGGAATTGTCCCGGTATGCTTGGGGCAATACTCGATGCATTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGCGAAGACACTTTCCAGCTTGAAGCAGTCGGAGGAGAAAGTCAAGAGAACGAAAGCATTGACGCGCAAGTGGTAAAGCAAGCAGTGCTTCAAGCAATCCAAAACATGGATTAA 453 0.4525 MDSRRRGKNASMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVDGLNSELGTAESSISQDELPMVTVETLERGFLINVFSERNCPGMLGAILDAFEELGLDVLDARVSCEDTFQLEAVGGESQENESIDAQVVKQAVLQAIQNMD* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1101 150 Gene3D - 1 67 IPR036638 GO:0046983
Gso1g1101 150 Coils Coil 34 61 - -
Gso1g1101 150 ProSiteProfiles ACT domain profile. 81 150 IPR002912 -
Gso1g1101 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 62 IPR036638 GO:0046983
Gso1g1101 150 CDD ACT_UUR-ACR-like 90 146 - -
Gso1g1101 150 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 150 - -
Gso1g1101 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1101 Gso-Chr1 44920078 44922230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1101 4 63 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 40.984 5.53e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1101 - - gmx:100500546 286.96