Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso1g1089 | ATGTCTTTCAGTTTCACTGACCTTCTTTTTACCAACAACAATAACATGAACAGGGATGATGATCCCTTTGGACTTGAGTTTGCTAATAACTTCAAGTCAGCTTCACTGCCTCTCTCTCCTTCTTCAATCTACCCTTCTTATGCTGAGTTCCCTCCTGGTTTTGCCCCAACCACACAGTCATTGAATCCACACCACTTTTTTTCTTCTCAAAATGTTCCTGCATCTTACACAACTGAGCCATCTTCTAGCATGAGTTTCAACATGAGAAACAGTTCAACTATGGGTCAACATGGAAACAAGGAGGAAGAGAGAAACTACTCTGACCACTCTTTCCAAACAAAAGCAAACCACGTGCCTCTCTTTCAATCTTCCACAAGCATATTTCAAGTGGAGCCACAAAAGAAACAGGACACAATGATATTCAATGAAGCTGCAAAGCAAACAGATTTCTCATCTGAGAGGACAGAAACAAAATCTGAATATCCATCCACTCAGGGCTTCTCAACAGCATTAGCCTCAATCAAACATGAAATACAAAGCAATTCTGCTCCTGGATCTGTTCAATTTAACTCCATTGCTCCTAAGTCTATTAGGGAACAAAGGAGATCAGAAGATGGTTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGCGAAAATCCACGTAGTTATTACAAGTGCACGCACCCGAGTTGCCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATATCACTGAAATAGTATACAAGGGAAGTCACAATCATCCCAAGCCACATGGTAGAAAAAATGGTTCTCAATCAATTCATCAAACTTCTTCACCCTGCACCAACTCGGGGATTTCTGATCAATCTGTAGGAGATGAAGATCTAGAGCAAATATCACAGACTAGTTATTCTGGAGGGGGTGATGATGACCTTGGAAATGAGGCCAAAAGATGGAAGGGGGAGAATGAAAATGATGGCCATTCCTATTCTTCTGCTGGGAGTAGAACTGTTAAGGAACCTAAAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTAGCCCCGGGTTGTCCAGTGAGAAAACATGTTGAGAGAGCTTCACATGACATGAAAGCTGTGATTACGACTTATGAAGGGAAACATATCCATGATGTACCATTAGGACGAGGAAACTCAAGCTATAGCATGAACAGAAATTCTCTAAACAACACCTCCAACAACACCAACACCAGCAATGTAACAGCTCCTGCTCCTATAAGGCCCTCAGCACTGACTAACTATTCTAACTCAGCAAGTTTCACAAACTCACTTCATGACACAAAGCAACCAACATCTGCAGGTCAAGAACCTTTTCCAATGGACTTGCTGCTGAGCCCTGGAAGCATCGGATTTTCGGCTAATGACTCATTCCTTCAGTCTTTTTTGTCAAAGAACTTTTAA | 1518 | 0.415 | MSFSFTDLLFTNNNNMNRDDDPFGLEFANNFKSASLPLSPSSIYPSYAEFPPGFAPTTQSLNPHHFFSSQNVPASYTTEPSSSMSFNMRNSSTMGQHGNKEEERNYSDHSFQTKANHVPLFQSSTSIFQVEPQKKQDTMIFNEAAKQTDFSSERTETKSEYPSTQGFSTALASIKHEIQSNSAPGSVQFNSIAPKSIREQRRSEDGYNWRKYGEKQVKGSENPRSYYKCTHPSCPTKKKVERSLEGHITEIVYKGSHNHPKPHGRKNGSQSIHQTSSPCTNSGISDQSVGDEDLEQISQTSYSGGGDDDLGNEAKRWKGENENDGHSYSSAGSRTVKEPKVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVAPGCPVRKHVERASHDMKAVITTYEGKHIHDVPLGRGNSSYSMNRNSLNNTSNNTNTSNVTAPAPIRPSALTNYSNSASFTNSLHDTKQPTSAGQEPFPMDLLLSPGSIGFSANDSFLQSFLSKNF* | 506 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso1g1089 | 505 | SMART | WRKY_cls | 203 | 261 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Gso1g1089 | 505 | SMART | WRKY_cls | 352 | 411 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Gso1g1089 | 505 | MobiDBLite | consensus disorder prediction | 78 | 95 | - | - | |
Gso1g1089 | 505 | MobiDBLite | consensus disorder prediction | 427 | 473 | - | - | |
Gso1g1089 | 505 | ProSiteProfiles | WRKY domain profile. | 347 | 412 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Gso1g1089 | 505 | MobiDBLite | consensus disorder prediction | 267 | 306 | - | - | |
Gso1g1089 | 505 | MobiDBLite | consensus disorder prediction | 199 | 218 | - | - | |
Gso1g1089 | 505 | SUPERFAMILY | WRKY DNA-binding domain | 199 | 262 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Gso1g1089 | 505 | MobiDBLite | consensus disorder prediction | 324 | 339 | - | - | |
Gso1g1089 | 505 | MobiDBLite | consensus disorder prediction | 78 | 108 | - | - | |
Gso1g1089 | 505 | Gene3D | WRKY domain | 189 | 263 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Gso1g1089 | 505 | Gene3D | WRKY domain | 339 | 405 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Gso1g1089 | 505 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 12 | 503 | IPR044810 | GO:0003700 | |
Gso1g1089 | 505 | MobiDBLite | consensus disorder prediction | 427 | 477 | - | - | |
Gso1g1089 | 505 | MobiDBLite | consensus disorder prediction | 253 | 339 | - | - | |
Gso1g1089 | 505 | SUPERFAMILY | WRKY DNA-binding domain | 344 | 412 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Gso1g1089 | 505 | MobiDBLite | consensus disorder prediction | 309 | 323 | - | - | |
Gso1g1089 | 505 | ProSiteProfiles | WRKY domain profile. | 198 | 262 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Gso1g1089 | 505 | MobiDBLite | consensus disorder prediction | 199 | 224 | - | - | |
Gso1g1089 | 505 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 12 | 503 | - | - | |
Gso1g1089 | 505 | Pfam | WRKY DNA -binding domain | 353 | 409 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Gso1g1089 | 505 | Pfam | WRKY DNA -binding domain | 204 | 260 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso1g1089 | Gso-Chr1 | 44508395 | 44511909 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso1g1089 | 198 | 482 | WRKY Transcription Factor Family | AT2G38470 | 54.717 | 7.19e-104 | 319 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Gso1g1089 | WRKY | 4.9e-24 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso1g1089 | K13424 | - | gmx:100127367 | 977.237 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso18g1686 | 18 | 48948605 | 48951669 | Gso1g1089 | 1 | 44508395 | 44511909 | PCT | |
Gso9g2314 | 9 | 47411844 | 47414893 | Gso1g1089 | 1 | 44508395 | 44511909 | PCT | |
Gso1g1089 | 1 | 44508395 | 44511909 | Gso18g1686 | 18 | 48948605 | 48951669 | PCT | |
Gso1g1089 | 1 | 44508395 | 44511909 | Gso9g2314 | 9 | 47411844 | 47414893 | PCT |