Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1089 ATGTCTTTCAGTTTCACTGACCTTCTTTTTACCAACAACAATAACATGAACAGGGATGATGATCCCTTTGGACTTGAGTTTGCTAATAACTTCAAGTCAGCTTCACTGCCTCTCTCTCCTTCTTCAATCTACCCTTCTTATGCTGAGTTCCCTCCTGGTTTTGCCCCAACCACACAGTCATTGAATCCACACCACTTTTTTTCTTCTCAAAATGTTCCTGCATCTTACACAACTGAGCCATCTTCTAGCATGAGTTTCAACATGAGAAACAGTTCAACTATGGGTCAACATGGAAACAAGGAGGAAGAGAGAAACTACTCTGACCACTCTTTCCAAACAAAAGCAAACCACGTGCCTCTCTTTCAATCTTCCACAAGCATATTTCAAGTGGAGCCACAAAAGAAACAGGACACAATGATATTCAATGAAGCTGCAAAGCAAACAGATTTCTCATCTGAGAGGACAGAAACAAAATCTGAATATCCATCCACTCAGGGCTTCTCAACAGCATTAGCCTCAATCAAACATGAAATACAAAGCAATTCTGCTCCTGGATCTGTTCAATTTAACTCCATTGCTCCTAAGTCTATTAGGGAACAAAGGAGATCAGAAGATGGTTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGCGAAAATCCACGTAGTTATTACAAGTGCACGCACCCGAGTTGCCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATATCACTGAAATAGTATACAAGGGAAGTCACAATCATCCCAAGCCACATGGTAGAAAAAATGGTTCTCAATCAATTCATCAAACTTCTTCACCCTGCACCAACTCGGGGATTTCTGATCAATCTGTAGGAGATGAAGATCTAGAGCAAATATCACAGACTAGTTATTCTGGAGGGGGTGATGATGACCTTGGAAATGAGGCCAAAAGATGGAAGGGGGAGAATGAAAATGATGGCCATTCCTATTCTTCTGCTGGGAGTAGAACTGTTAAGGAACCTAAAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTAGCCCCGGGTTGTCCAGTGAGAAAACATGTTGAGAGAGCTTCACATGACATGAAAGCTGTGATTACGACTTATGAAGGGAAACATATCCATGATGTACCATTAGGACGAGGAAACTCAAGCTATAGCATGAACAGAAATTCTCTAAACAACACCTCCAACAACACCAACACCAGCAATGTAACAGCTCCTGCTCCTATAAGGCCCTCAGCACTGACTAACTATTCTAACTCAGCAAGTTTCACAAACTCACTTCATGACACAAAGCAACCAACATCTGCAGGTCAAGAACCTTTTCCAATGGACTTGCTGCTGAGCCCTGGAAGCATCGGATTTTCGGCTAATGACTCATTCCTTCAGTCTTTTTTGTCAAAGAACTTTTAA 1518 0.415 MSFSFTDLLFTNNNNMNRDDDPFGLEFANNFKSASLPLSPSSIYPSYAEFPPGFAPTTQSLNPHHFFSSQNVPASYTTEPSSSMSFNMRNSSTMGQHGNKEEERNYSDHSFQTKANHVPLFQSSTSIFQVEPQKKQDTMIFNEAAKQTDFSSERTETKSEYPSTQGFSTALASIKHEIQSNSAPGSVQFNSIAPKSIREQRRSEDGYNWRKYGEKQVKGSENPRSYYKCTHPSCPTKKKVERSLEGHITEIVYKGSHNHPKPHGRKNGSQSIHQTSSPCTNSGISDQSVGDEDLEQISQTSYSGGGDDDLGNEAKRWKGENENDGHSYSSAGSRTVKEPKVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVAPGCPVRKHVERASHDMKAVITTYEGKHIHDVPLGRGNSSYSMNRNSLNNTSNNTNTSNVTAPAPIRPSALTNYSNSASFTNSLHDTKQPTSAGQEPFPMDLLLSPGSIGFSANDSFLQSFLSKNF* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1089 505 SMART WRKY_cls 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1089 505 SMART WRKY_cls 352 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1089 505 MobiDBLite consensus disorder prediction 78 95 - -
Gso1g1089 505 MobiDBLite consensus disorder prediction 427 473 - -
Gso1g1089 505 ProSiteProfiles WRKY domain profile. 347 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1089 505 MobiDBLite consensus disorder prediction 267 306 - -
Gso1g1089 505 MobiDBLite consensus disorder prediction 199 218 - -
Gso1g1089 505 SUPERFAMILY WRKY DNA-binding domain 199 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g1089 505 MobiDBLite consensus disorder prediction 324 339 - -
Gso1g1089 505 MobiDBLite consensus disorder prediction 78 108 - -
Gso1g1089 505 Gene3D WRKY domain 189 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g1089 505 Gene3D WRKY domain 339 405 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g1089 505 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 503 IPR044810 GO:0003700
Gso1g1089 505 MobiDBLite consensus disorder prediction 427 477 - -
Gso1g1089 505 MobiDBLite consensus disorder prediction 253 339 - -
Gso1g1089 505 SUPERFAMILY WRKY DNA-binding domain 344 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g1089 505 MobiDBLite consensus disorder prediction 309 323 - -
Gso1g1089 505 ProSiteProfiles WRKY domain profile. 198 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1089 505 MobiDBLite consensus disorder prediction 199 224 - -
Gso1g1089 505 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 12 503 - -
Gso1g1089 505 Pfam WRKY DNA -binding domain 353 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1089 505 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1089 Gso-Chr1 44508395 44511909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1089 198 482 WRKY Transcription Factor Family AT2G38470 54.717 7.19e-104 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso1g1089 WRKY 4.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1089 K13424 - gmx:100127367 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1686 18 48948605 48951669 Gso1g1089 1 44508395 44511909 PCT
Gso9g2314 9 47411844 47414893 Gso1g1089 1 44508395 44511909 PCT
Gso1g1089 1 44508395 44511909 Gso18g1686 18 48948605 48951669 PCT
Gso1g1089 1 44508395 44511909 Gso9g2314 9 47411844 47414893 PCT