Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1070 ATGGGACACAACAACACTTGTCATCATCATGTCAAAGGTTTCCACACAGACCCTTTTCAGCATAGCCTCTCTTTTGCTTCAAATGGTGGTGGTGATAGGAGGAGGAAATGCCGGAGCAATGAAAAAAGTGGTAGCGGTGGTTTCATTTGCTTACCCTTTTTTCTGTTTCTTTTGGCTTCCACTTCCACCATTCAGCATGTTTCAGGCCACTTGTGGGATGGGGTGGTTGTGACTCAGGCTGATTTTCAAGCCCTTAGGGTTATTAAGAATGAGCTTATTGACTTCAAAGGGGTGCTGAAAAGCTGGAATGACAGTGGTGTAGGTGCTTGTTCAGGAGGCTGGGCTGGAATCAAGTGTGTGAATGGTGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGTGGGAGAATTTCAGAGAAAATTAGCCAACTTCAGTCTCTTAGGAAGCTCAGTCTCCATGACAATGCTCTTGGTGGTCCAGTTCCTTTGACACTTGGTTTGCTTCCTAACCTTAGAGGAGTTTATCTCTTCAACAACAAGCTTTCAGGTTCTATCCCTCCTTCCCTTGGAAACTGTCCAATGCTTCAGTCTCTTGATATTAGCAACAATTCCCTCAGTGGTAAAATCCCTTCTAGTTTAGCAAGATCCACTAGGATATTCAGGATCAATTTGAGCTTCAACTCACTTTCTGGATCCATTCCTAGTAGTCTCACTATGTCTCCTTCTCTAACCATTCTTGCACTTCAGCACAACAATCTCTCCGGTTCTATCCCAGATTCTTGGGGTGGAACTGGAAAGAAGAAAGCCTCTCAGCTTCAAGTTTTGACCCTTGATCACAATCTTTTTTCTGGAACTATCCCAGTTTCTCTAGGGAAGCTAGCTTTTCTTGAAAATGTTTCCTTGAGTCATAACAAAATTGTAGGGGCTATTCCAAGTGAGCTAGGTGCACTTTCCAGGCTTCAAATTCTTGATCTATCAAACAATGTCATCAATGGCAGCCTTCCTGCTAGCTTCTCTAACCTCTCTTCTCTTGTTTCATTGAATCTAGAGAGCAATCAACTTGCAAGCCATATTCCCGATTCTTTGGACAGGTTGCACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGCTTGATGGCCAAATCCCAACAACAATTGGGAACATTTCAAGCATTAGCCAAATTGATTTATCTGAGAACAAATTAGTTGGAGAAATCCCAGATTCCCTTACCAAACTTACAAATCTCAGTTCATTCAATGTCTCCTACAACAACCTATCTGGTGCTGTTCCATCTCTACTTTCCAAAAGGTTCAATGCTAGCTCATTTGTTGGGAATCTTGAGCTATGTGGATTCATCACTTCAAAACCATGCTCTTCACCCCCTCCTCATAACCTTCCAACTCAATCACCACATGCTCCTTCCAAGCCGCATCACCACAAACTAAGCACCAAGGACATAATCCTCATAGTGGCAGGTATTCTCCTGTTGGTTCTGTTAGTACTGTGCTGCTTCTTGCTGTGTTGTTTGATCAGGAGAAGAGCTGCTTCAAGCAGAAAGAGTAGCAAGACTGCTAAGGCTGCAGCATCTGCCAGGGGTGTTGAGAAAGGTGCCTCAGCTGGCGAAGTTGAATCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGGCCTTTTGTGTTTACTGCTGATGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATTTGGGACAGCATACAAAGCGACACTGGAAGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAAAAGACTACTAAAGGGCAGAAGGAGTTTGAAACTGAGGTTGCTGCACTTGGCAAAATCAGACACCCAAATCTCTTGGCACTTAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTGTTTGATTACATGACCAAAGGAAGCCTAGCATCATTCCTTCATGCTCGCGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAGCCATCGGAGTTACTCGCGGCTTGAGCTACCTCCACAACCAAGAGAACATTGTACACGGGAACCTTACATCAAGCAACATACTATTGGATGAGCAAACAGAAGCCCACATAACAGACTTTGGCCTCTCAAGGCTGATGACAACTTCTGCCAACACCAACATCATCGCTACTGCAGGAAGTCTCGGCTACAATGCACCAGAGCTTTCAAAGACCAAGAAGCCTTCCACAAAGACTGATGTGTACAGCCTCGGTGTCATCATGTTGGAGCTCTTGACCGGTAAACCGCCTGGGGAGCCAACCAATGGCATGGACTTGCCACAATGGGTGGCATCCATAGTTAAGGAAGAGTGGACTAATGAAGTGTTTGATTTGGAGCTCATGAGGGATGCACCAGCCATAGGGGATGAATTGCTTAACACATTGAAGTTAGCATTGCATTGTGTGGATCCTTCTCCAGCTGCTAGGCCTGAAGTTCAGCAAGTTCTGCAGCAATTGGAGGAGATTAAACCAGACTTAGCTGCAGGGGATGATGATGGAGCTAAGGTCCAAACAACTGAGTAA 2580 0.4469 MGHNNTCHHHVKGFHTDPFQHSLSFASNGGGDRRRKCRSNEKSGSGGFICLPFFLFLLASTSTIQHVSGHLWDGVVVTQADFQALRVIKNELIDFKGVLKSWNDSGVGACSGGWAGIKCVNGEVIAIQLPWRGLGGRISEKISQLQSLRKLSLHDNALGGPVPLTLGLLPNLRGVYLFNNKLSGSIPPSLGNCPMLQSLDISNNSLSGKIPSSLARSTRIFRINLSFNSLSGSIPSSLTMSPSLTILALQHNNLSGSIPDSWGGTGKKKASQLQVLTLDHNLFSGTIPVSLGKLAFLENVSLSHNKIVGAIPSELGALSRLQILDLSNNVINGSLPASFSNLSSLVSLNLESNQLASHIPDSLDRLHNLSVLNLKNNKLDGQIPTTIGNISSISQIDLSENKLVGEIPDSLTKLTNLSSFNVSYNNLSGAVPSLLSKRFNASSFVGNLELCGFITSKPCSSPPPHNLPTQSPHAPSKPHHHKLSTKDIILIVAGILLLVLLVLCCFLLCCLIRRRAASSRKSSKTAKAAASARGVEKGASAGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAFGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIAIGVTRGLSYLHNQENIVHGNLTSSNILLDEQTEAHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPSTKTDVYSLGVIMLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPDLAAGDDDGAKVQTTE* 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1070 859 ProSiteProfiles Protein kinase domain profile. 570 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1070 859 Pfam Protein tyrosine and serine/threonine kinase 573 838 IPR001245 GO:0004672|GO:0006468
Gso1g1070 859 Gene3D Ribonuclease Inhibitor 77 217 IPR032675 -
Gso1g1070 859 Pfam Leucine rich repeat 297 355 IPR001611 GO:0005515
Gso1g1070 859 Pfam Leucine Rich Repeat 196 214 IPR001611 GO:0005515
Gso1g1070 859 PRINTS Leucine-rich repeat signature 196 209 - -
Gso1g1070 859 PRINTS Leucine-rich repeat signature 318 331 - -
Gso1g1070 859 SUPERFAMILY Protein kinase-like (PK-like) 574 843 IPR011009 -
Gso1g1070 859 SUPERFAMILY L domain-like 118 461 - -
Gso1g1070 859 SMART LRR_typ_2 366 390 IPR003591 -
Gso1g1070 859 SMART LRR_typ_2 169 193 IPR003591 -
Gso1g1070 859 SMART LRR_typ_2 318 341 IPR003591 -
Gso1g1070 859 SMART LRR_typ_2 342 365 IPR003591 -
Gso1g1070 859 SMART LRR_typ_2 145 168 IPR003591 -
Gso1g1070 859 SMART LRR_typ_2 414 437 IPR003591 -
Gso1g1070 859 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 17 847 - -
Gso1g1070 859 Pfam Leucine rich repeat N-terminal domain 80 119 IPR013210 -
Gso1g1070 859 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 17 847 - -
Gso1g1070 859 Gene3D Ribonuclease Inhibitor 218 334 IPR032675 -
Gso1g1070 859 Gene3D Transferase(Phosphotransferase) domain 1 648 854 - -
Gso1g1070 859 CDD STKc_IRAK 576 841 - -
Gso1g1070 859 Gene3D Ribonuclease Inhibitor 335 461 IPR032675 -
Gso1g1070 859 Gene3D Phosphorylase Kinase; domain 1 576 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1070 Gso-Chr1 43941040 43944933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1070 70 843 Receptor kinase-like Gene Family AT3G51740 69.112 0.0 1036
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso1g1070 PK_Tyr_Ser-Thr 4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1070 - - gmx:100799290 1561.58