Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1065 ATGGCACATACTTCCTCGGGAGCTTCTGAAATAAAATATGTTCTTTCTCTTTGTCTCCTGCTTACTTCGGGATTGATGGTTGCTGCATCAAAGCAAATGTTAGATAATGTTCCTCAAATGAAGTATGATGTTTTTGTTAACTTCAGGGGCAAGGACATCCGTGACGGTTTTCTCGGTTATTTGACTCGGGCTTTTCATCAAAAGCAAATATATGCTTTCATAGATGATAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTCAGGGATCATCGATTTCATTGACCATATTCTCCGAAAACTATACTTCTTCACGTTGGTGTTTGGAAGAACTTGTGAAAATACTTGAGTGCAGGGAGAAATACAGACAAACTGTAATACCTGTTTTCTACGGGGTAAATCCCACAGATGTGCGGCATCAGAAGGGGAATTATGGAGAAGCTCTTGCTGTACTTGGAAAGAAATATAATTTGACCACCGTGCAAAACTGGAGAAATGCTTTAAAGAAGGCTGCTGATTTATCAGGAATAAAGTCATTCGATTACAAGACTGAAGTTGATCTGCTTGGAGAAATCATCAACACTGTCAATCTTGTGTTGATAAGTTTGGATACGCATCCATTTAACATAAAAGGACATATAGGAATCGAAAAATCAATTCAACATTTAGAGTCATTGTTACACCAAGAGTCAAAATATGTCCGAGTTATTGGAATTTGGGGTATGGGCGGAATTGGAAAGACAACAATTGCAGAAGAAATGTTTAAAAAGCTATATTCCGAATATGATTCTTATTACTTTTTGGAAAATGAAGAGGAAGAATCAAGAAAGCATGGAACAATTTCGTTGAAGGAAAAACTTTTTTCTGCACTACTCGGAGAAAATGTGAAAATGAACATATTGCACGGGTTGTCAAATTATGTTAAGAGAAAGATAGGTTTTATGAAGGTTTTAATCGTTCTTGATGATGTGAATGATTCAGATTTACTAGAAAAATTAATTGGAAACCTTGATTGGTTTGGCCGAGGTAGTAGAATCATTATAACAACTAGAGATAAACAAGTGCTTATTGCAAATAAAGTTGATGATATATACCACGTTGGGGCATTGAATTCTAGTGAAGCACTGGAGCTTTTTAGTTTTTATGCCTTTAACCAAAATCATCTTGATATGGAGTATTATAAGCTATCAAAGAGAGTGGTCAATTATTCCCAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTCATCTTCTTTGTGGGAAAGATAAGGAAGTATGGGAAAGTCAGCTAGACAAACTTAAAAACATGCCAAATACAGATATTTACAATGCAATGAGATTGAGTTATGATGATCTAGATCGTAAAGAACAAAAGATTCTTTTAGATCTTGCATGTTTTTTCATGGGATTGAATTTGAAAGTAGACCACATAAAAGTTCTATTGAAAGATAGCGAAAAAGATGATTCAGTGGTTGTTGGGTTAGAAAGATTGAAAGATAAGGCTCTTATAACCATTTCTGAAGATAATATTATATCTATGCACGACATCATACAAGAAATGGCTTGGGAGATTGTTCGTCAAGAATCAATTGAAGACCCAGGAAATCGAAGCCGATTGATGGATCCTAATGACATTTATGAAGTATTAAAATATAACAAGGGGACTGAAGCCATAAGAAGCATAAGGGCAGACATGTCAGTAATTAGGAAGCTGCAGTTAAGCCCTCACATATTTACTAAGATGAGCAAACTGCAGTTTTTGTATTTTCCTAGCAAATATAATCAAGATGGCCTTTCTCTCCTTCCTCACGGGCTTCAATCTTTCCCAGTTGAGCTAAGATATGTTGCTTGGATGCACTACCCTCTAAAGTCCTTGCCTAAGAACTTTTCTGCCAAAAACATTGTTATGTTTGACTTGTCTTGTAGCCAAGTGGAAAAACTTTGGGATGGAGTGCAGAATTTGATGAATTTAAAAGAACTTAAAGTCTCCGGTTCTGAAAACTTGAAGGAGCTGCCAGACCTTTCAAAAGCGACAAATCTTGAAGTGCTGGATATCAATATATGTCCTAGGTTGACTAGTGTGTCTCCATCTATTTTGTCTCTCAAGAGATTGTCTATAGCTTATTGTTCCCTTACAAAAATTACAAGCAAGAACCACCTACCCTCCCTTAGTTTTCTCAACCTTGAATCATGCAAAAAACTAAGGGAATTTTCAGTGACATCAGAGAATATGATTGAACTTGATTTATCATCCACTCGTGTCAATTCATTGCCTTCATCTTTTGGACGTCAAAGCAAGCTCAAAATCCTACGGCTAAGAGACAGTGGCATCAATAGTTTGCCTTCAAGCTTCAAGAATCTTACAAGACTGCAATATCTGACTGTATATAAATCCAGGGAGCTTTGTACTCTAACAGAGCTTCCCCTATCCCTTAAAACTCTAGATGCCACAGATTGCACATCATTGAAGACTGTATTGTTTCCATCAATTGCTCAGCAATTCAAGGAAAACAGGAAGGAAGTTCTGTTTTGGAATTGCTTGAAATTGGATGAACATTCTCTCAAGGCTATTGGGTTAAATGCACATATTAACGTGATGAGATTTGCATACCAACATTTATCTGCACCAGATGAAAATTATGATGATTACGATCGTACTTATGAATCTTATCAGGTAAAGTATGTGTATCCAGGAGGCATAGTTCCAGAGTGGATGGAGTATAAAACAACAAAGGATTATATAATTATTGATCTCTCTTCTAGTCCACACTCCTCACAATTGGGCTTCATTTTCAGCTTTGTTATCTCTGGTCCTATGGTGAAGGCAATAATGGGTTACAGATTTACATTTTATATCACTGTCAGTGATGATGAGGACGAAAATAAAAAGGATAGTATCGACATCTACATGTCTGACTCAATTGTCTGGGTTGCATCAGATCATGTGTGTGTGATTTATGACCAACGATGTTCTCGCTACCTAAACAGTAGAGTCAAAAATCAAACAAGGTTTAAAATCAAGGTTGAAGCAATGGCAGCAGCGGTGGCTCATCAGAGGGGCGTGGGGTTAAAAGGGTTTGGAGTCAGCCCAATAAACACCTCAGCATATCACAATTTCAGGAAACACATAAACACCACAGCATATCACAATTTCATTCAGGAAATGAACATCCCAGCAGATCACAGTTTCATTCAGAAAATAAAAGCCACAGCAGATCATAGTTTGATTCAACAAATGGAAGTGCCTGATCCTTTGTATTTCATTCCAATGCTTCCTATCTTCCTCTTTATATCCTTCTTTTTGTTAAGAGGCAGACTTTGCTTTAGACATAAGTTCTTTTATGTAAATTCTTGTTATACTGCAGGCCTGCTGAGTGATTATACAAACAGCAATAAGCTTCATTGA 3417 0.3679 MAHTSSGASEIKYVLSLCLLLTSGLMVAASKQMLDNVPQMKYDVFVNFRGKDIRDGFLGYLTRAFHQKQIYAFIDDKLEKGDEIWPSLVGAIQGSSISLTIFSENYTSSRWCLEELVKILECREKYRQTVIPVFYGVNPTDVRHQKGNYGEALAVLGKKYNLTTVQNWRNALKKAADLSGIKSFDYKTEVDLLGEIINTVNLVLISLDTHPFNIKGHIGIEKSIQHLESLLHQESKYVRVIGIWGMGGIGKTTIAEEMFKKLYSEYDSYYFLENEEEESRKHGTISLKEKLFSALLGENVKMNILHGLSNYVKRKIGFMKVLIVLDDVNDSDLLEKLIGNLDWFGRGSRIIITTRDKQVLIANKVDDIYHVGALNSSEALELFSFYAFNQNHLDMEYYKLSKRVVNYSQGIPLVLKVLGHLLCGKDKEVWESQLDKLKNMPNTDIYNAMRLSYDDLDRKEQKILLDLACFFMGLNLKVDHIKVLLKDSEKDDSVVVGLERLKDKALITISEDNIISMHDIIQEMAWEIVRQESIEDPGNRSRLMDPNDIYEVLKYNKGTEAIRSIRADMSVIRKLQLSPHIFTKMSKLQFLYFPSKYNQDGLSLLPHGLQSFPVELRYVAWMHYPLKSLPKNFSAKNIVMFDLSCSQVEKLWDGVQNLMNLKELKVSGSENLKELPDLSKATNLEVLDINICPRLTSVSPSILSLKRLSIAYCSLTKITSKNHLPSLSFLNLESCKKLREFSVTSENMIELDLSSTRVNSLPSSFGRQSKLKILRLRDSGINSLPSSFKNLTRLQYLTVYKSRELCTLTELPLSLKTLDATDCTSLKTVLFPSIAQQFKENRKEVLFWNCLKLDEHSLKAIGLNAHINVMRFAYQHLSAPDENYDDYDRTYESYQVKYVYPGGIVPEWMEYKTTKDYIIIDLSSSPHSSQLGFIFSFVISGPMVKAIMGYRFTFYITVSDDEDENKKDSIDIYMSDSIVWVASDHVCVIYDQRCSRYLNSRVKNQTRFKIKVEAMAAAVAHQRGVGLKGFGVSPINTSAYHNFRKHINTTAYHNFIQEMNIPADHSFIQKIKATADHSLIQQMEVPDPLYFIPMLPIFLFISFFLLRGRLCFRHKFFYVNSCYTAGLLSDYTNSNKLH* 1139
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1065 1138 Pfam TIR domain 41 188 IPR000157 GO:0007165
Gso1g1065 1138 Gene3D Ribonuclease Inhibitor 747 899 IPR032675 -
Gso1g1065 1138 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 39 884 IPR044974 GO:0006952
Gso1g1065 1138 ProSiteProfiles TIR domain profile. 40 204 IPR000157 GO:0007165
Gso1g1065 1138 Gene3D Ribonuclease Inhibitor 550 746 IPR032675 -
Gso1g1065 1138 Pfam NB-ARC domain 223 443 IPR002182 GO:0043531
Gso1g1065 1138 Gene3D - 39 205 IPR035897 -
Gso1g1065 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 467 IPR027417 -
Gso1g1065 1138 SMART till_3 41 178 IPR000157 GO:0007165
Gso1g1065 1138 PRINTS Disease resistance protein signature 240 255 - -
Gso1g1065 1138 PRINTS Disease resistance protein signature 315 329 - -
Gso1g1065 1138 PRINTS Disease resistance protein signature 408 422 - -
Gso1g1065 1138 PRINTS Disease resistance protein signature 722 738 - -
Gso1g1065 1138 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 39 884 - -
Gso1g1065 1138 Gene3D - 206 368 IPR027417 -
Gso1g1065 1138 Gene3D - 373 457 IPR042197 -
Gso1g1065 1138 SUPERFAMILY Toll/Interleukin receptor TIR domain 39 180 IPR035897 -
Gso1g1065 1138 SUPERFAMILY L domain-like 567 853 - -
Gso1g1065 1138 SUPERFAMILY "Winged helix" DNA-binding domain 444 554 IPR036390 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso1g1065 Gso-Chr1 43803012 43808021 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1065 42 839 WRKY Transcription Factor Family AT4G12020 33.496 1.50e-93 328
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1065 - - gmx:100796110 2115.12