LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso1g1065	ATGGCACATACTTCCTCGGGAGCTTCTGAAATAAAATATGTTCTTTCTCTTTGTCTCCTGCTTACTTCGGGATTGATGGTTGCTGCATCAAAGCAAATGTTAGATAATGTTCCTCAAATGAAGTATGATGTTTTTGTTAACTTCAGGGGCAAGGACATCCGTGACGGTTTTCTCGGTTATTTGACTCGGGCTTTTCATCAAAAGCAAATATATGCTTTCATAGATGATAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTCAGGGATCATCGATTTCATTGACCATATTCTCCGAAAACTATACTTCTTCACGTTGGTGTTTGGAAGAACTTGTGAAAATACTTGAGTGCAGGGAGAAATACAGACAAACTGTAATACCTGTTTTCTACGGGGTAAATCCCACAGATGTGCGGCATCAGAAGGGGAATTATGGAGAAGCTCTTGCTGTACTTGGAAAGAAATATAATTTGACCACCGTGCAAAACTGGAGAAATGCTTTAAAGAAGGCTGCTGATTTATCAGGAATAAAGTCATTCGATTACAAGACTGAAGTTGATCTGCTTGGAGAAATCATCAACACTGTCAATCTTGTGTTGATAAGTTTGGATACGCATCCATTTAACATAAAAGGACATATAGGAATCGAAAAATCAATTCAACATTTAGAGTCATTGTTACACCAAGAGTCAAAATATGTCCGAGTTATTGGAATTTGGGGTATGGGCGGAATTGGAAAGACAACAATTGCAGAAGAAATGTTTAAAAAGCTATATTCCGAATATGATTCTTATTACTTTTTGGAAAATGAAGAGGAAGAATCAAGAAAGCATGGAACAATTTCGTTGAAGGAAAAACTTTTTTCTGCACTACTCGGAGAAAATGTGAAAATGAACATATTGCACGGGTTGTCAAATTATGTTAAGAGAAAGATAGGTTTTATGAAGGTTTTAATCGTTCTTGATGATGTGAATGATTCAGATTTACTAGAAAAATTAATTGGAAACCTTGATTGGTTTGGCCGAGGTAGTAGAATCATTATAACAACTAGAGATAAACAAGTGCTTATTGCAAATAAAGTTGATGATATATACCACGTTGGGGCATTGAATTCTAGTGAAGCACTGGAGCTTTTTAGTTTTTATGCCTTTAACCAAAATCATCTTGATATGGAGTATTATAAGCTATCAAAGAGAGTGGTCAATTATTCCCAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTCATCTTCTTTGTGGGAAAGATAAGGAAGTATGGGAAAGTCAGCTAGACAAACTTAAAAACATGCCAAATACAGATATTTACAATGCAATGAGATTGAGTTATGATGATCTAGATCGTAAAGAACAAAAGATTCTTTTAGATCTTGCATGTTTTTTCATGGGATTGAATTTGAAAGTAGACCACATAAAAGTTCTATTGAAAGATAGCGAAAAAGATGATTCAGTGGTTGTTGGGTTAGAAAGATTGAAAGATAAGGCTCTTATAACCATTTCTGAAGATAATATTATATCTATGCACGACATCATACAAGAAATGGCTTGGGAGATTGTTCGTCAAGAATCAATTGAAGACCCAGGAAATCGAAGCCGATTGATGGATCCTAATGACATTTATGAAGTATTAAAATATAACAAGGGGACTGAAGCCATAAGAAGCATAAGGGCAGACATGTCAGTAATTAGGAAGCTGCAGTTAAGCCCTCACATATTTACTAAGATGAGCAAACTGCAGTTTTTGTATTTTCCTAGCAAATATAATCAAGATGGCCTTTCTCTCCTTCCTCACGGGCTTCAATCTTTCCCAGTTGAGCTAAGATATGTTGCTTGGATGCACTACCCTCTAAAGTCCTTGCCTAAGAACTTTTCTGCCAAAAACATTGTTATGTTTGACTTGTCTTGTAGCCAAGTGGAAAAACTTTGGGATGGAGTGCAGAATTTGATGAATTTAAAAGAACTTAAAGTCTCCGGTTCTGAAAACTTGAAGGAGCTGCCAGACCTTTCAAAAGCGACAAATCTTGAAGTGCTGGATATCAATATATGTCCTAGGTTGACTAGTGTGTCTCCATCTATTTTGTCTCTCAAGAGATTGTCTATAGCTTATTGTTCCCTTACAAAAATTACAAGCAAGAACCACCTACCCTCCCTTAGTTTTCTCAACCTTGAATCATGCAAAAAACTAAGGGAATTTTCAGTGACATCAGAGAATATGATTGAACTTGATTTATCATCCACTCGTGTCAATTCATTGCCTTCATCTTTTGGACGTCAAAGCAAGCTCAAAATCCTACGGCTAAGAGACAGTGGCATCAATAGTTTGCCTTCAAGCTTCAAGAATCTTACAAGACTGCAATATCTGACTGTATATAAATCCAGGGAGCTTTGTACTCTAACAGAGCTTCCCCTATCCCTTAAAACTCTAGATGCCACAGATTGCACATCATTGAAGACTGTATTGTTTCCATCAATTGCTCAGCAATTCAAGGAAAACAGGAAGGAAGTTCTGTTTTGGAATTGCTTGAAATTGGATGAACATTCTCTCAAGGCTATTGGGTTAAATGCACATATTAACGTGATGAGATTTGCATACCAACATTTATCTGCACCAGATGAAAATTATGATGATTACGATCGTACTTATGAATCTTATCAGGTAAAGTATGTGTATCCAGGAGGCATAGTTCCAGAGTGGATGGAGTATAAAACAACAAAGGATTATATAATTATTGATCTCTCTTCTAGTCCACACTCCTCACAATTGGGCTTCATTTTCAGCTTTGTTATCTCTGGTCCTATGGTGAAGGCAATAATGGGTTACAGATTTACATTTTATATCACTGTCAGTGATGATGAGGACGAAAATAAAAAGGATAGTATCGACATCTACATGTCTGACTCAATTGTCTGGGTTGCATCAGATCATGTGTGTGTGATTTATGACCAACGATGTTCTCGCTACCTAAACAGTAGAGTCAAAAATCAAACAAGGTTTAAAATCAAGGTTGAAGCAATGGCAGCAGCGGTGGCTCATCAGAGGGGCGTGGGGTTAAAAGGGTTTGGAGTCAGCCCAATAAACACCTCAGCATATCACAATTTCAGGAAACACATAAACACCACAGCATATCACAATTTCATTCAGGAAATGAACATCCCAGCAGATCACAGTTTCATTCAGAAAATAAAAGCCACAGCAGATCATAGTTTGATTCAACAAATGGAAGTGCCTGATCCTTTGTATTTCATTCCAATGCTTCCTATCTTCCTCTTTATATCCTTCTTTTTGTTAAGAGGCAGACTTTGCTTTAGACATAAGTTCTTTTATGTAAATTCTTGTTATACTGCAGGCCTGCTGAGTGATTATACAAACAGCAATAAGCTTCATTGA	3417	0.3679	MAHTSSGASEIKYVLSLCLLLTSGLMVAASKQMLDNVPQMKYDVFVNFRGKDIRDGFLGYLTRAFHQKQIYAFIDDKLEKGDEIWPSLVGAIQGSSISLTIFSENYTSSRWCLEELVKILECREKYRQTVIPVFYGVNPTDVRHQKGNYGEALAVLGKKYNLTTVQNWRNALKKAADLSGIKSFDYKTEVDLLGEIINTVNLVLISLDTHPFNIKGHIGIEKSIQHLESLLHQESKYVRVIGIWGMGGIGKTTIAEEMFKKLYSEYDSYYFLENEEEESRKHGTISLKEKLFSALLGENVKMNILHGLSNYVKRKIGFMKVLIVLDDVNDSDLLEKLIGNLDWFGRGSRIIITTRDKQVLIANKVDDIYHVGALNSSEALELFSFYAFNQNHLDMEYYKLSKRVVNYSQGIPLVLKVLGHLLCGKDKEVWESQLDKLKNMPNTDIYNAMRLSYDDLDRKEQKILLDLACFFMGLNLKVDHIKVLLKDSEKDDSVVVGLERLKDKALITISEDNIISMHDIIQEMAWEIVRQESIEDPGNRSRLMDPNDIYEVLKYNKGTEAIRSIRADMSVIRKLQLSPHIFTKMSKLQFLYFPSKYNQDGLSLLPHGLQSFPVELRYVAWMHYPLKSLPKNFSAKNIVMFDLSCSQVEKLWDGVQNLMNLKELKVSGSENLKELPDLSKATNLEVLDINICPRLTSVSPSILSLKRLSIAYCSLTKITSKNHLPSLSFLNLESCKKLREFSVTSENMIELDLSSTRVNSLPSSFGRQSKLKILRLRDSGINSLPSSFKNLTRLQYLTVYKSRELCTLTELPLSLKTLDATDCTSLKTVLFPSIAQQFKENRKEVLFWNCLKLDEHSLKAIGLNAHINVMRFAYQHLSAPDENYDDYDRTYESYQVKYVYPGGIVPEWMEYKTTKDYIIIDLSSSPHSSQLGFIFSFVISGPMVKAIMGYRFTFYITVSDDEDENKKDSIDIYMSDSIVWVASDHVCVIYDQRCSRYLNSRVKNQTRFKIKVEAMAAAVAHQRGVGLKGFGVSPINTSAYHNFRKHINTTAYHNFIQEMNIPADHSFIQKIKATADHSLIQQMEVPDPLYFIPMLPIFLFISFFLLRGRLCFRHKFFYVNSCYTAGLLSDYTNSNKLH*	1139

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso1g1065	1138	Pfam	TIR domain	41	188	IPR000157	GO:0007165
	Gso1g1065	1138	Gene3D	Ribonuclease Inhibitor	747	899	IPR032675	-
	Gso1g1065	1138	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	39	884	IPR044974	GO:0006952
	Gso1g1065	1138	ProSiteProfiles	TIR domain profile.	40	204	IPR000157	GO:0007165
	Gso1g1065	1138	Gene3D	Ribonuclease Inhibitor	550	746	IPR032675	-
	Gso1g1065	1138	Pfam	NB-ARC domain	223	443	IPR002182	GO:0043531
	Gso1g1065	1138	Gene3D	-	39	205	IPR035897	-
	Gso1g1065	1138	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	209	467	IPR027417	-
	Gso1g1065	1138	SMART	till_3	41	178	IPR000157	GO:0007165
	Gso1g1065	1138	PRINTS	Disease resistance protein signature	240	255	-	-
	Gso1g1065	1138	PRINTS	Disease resistance protein signature	315	329	-	-
	Gso1g1065	1138	PRINTS	Disease resistance protein signature	408	422	-	-
	Gso1g1065	1138	PRINTS	Disease resistance protein signature	722	738	-	-
	Gso1g1065	1138	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	39	884	-	-
	Gso1g1065	1138	Gene3D	-	206	368	IPR027417	-
	Gso1g1065	1138	Gene3D	-	373	457	IPR042197	-
	Gso1g1065	1138	SUPERFAMILY	Toll/Interleukin receptor TIR domain	39	180	IPR035897	-
	Gso1g1065	1138	SUPERFAMILY	L domain-like	567	853	-	-
	Gso1g1065	1138	SUPERFAMILY	"Winged helix" DNA-binding domain	444	554	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso1g1065	Gso-Chr1	43803012	43808021	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso1g1065	42	839	WRKY Transcription Factor Family	AT4G12020	33.496	1.50e-93	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso1g1065	-		-	gmx:100796110	2115.12