Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1049 ATGGAAGAAAGACATGGCTCACAATGTTCAAAGACAAATCCTTCTAACATTGATGAAGATGAGGAGTGTGAAAGTGAGGCCAATGAAGAGCAAAGTACGCAAAAAAACAATGGAGGAAGCTCAAGTAACAGCACAGTGGAAGAGAATGAGAAAAAGATAAGGCCTTATGTTAGATCCAAGATGCCAAGGCTTCGGTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCGGTTCAACGACTTGGAGGACAAGAGAGAGCAACACCAAAGTTGGTTCTTCAATTGATGAACGTCAAAGGTTTGAGTATTGCCCATGTCAAGAGTCATTTACAGATGTTTAGGAGCAAAAAGGTGGATGACCGAAATCAAGTATTTGCTGATTACAATAATCTTGTTGAAATTGGAGACAAAAATATTTATAATATTAGCCAACTTTCAATGCTTCAAGGGTATAATCCGAGTCAAAGTTCATCCTTCAGCTACACAAATAATTATCCATGTTATGGACTCGGGGATGCTTCTTTTGGTGTCTACGAAAAACTGTTACAAAGACCTTTCGATTGGTCTAATGCAATTTCTCGGGAAGGTTCATCCATTTTTGGGGAACAAAGCAAAATCCGTGAACCAAAAGATGAGTTTCTCTCATTTGGTGCTCATGACTCTCTAAGCGCACGCGCACGATTAAGCCACGTTGATCACATACCACCAATCAATATTTTGCAACAAAGAGCACAAAAAAATACCATGCCTATAAATCCAACAACAAATCCTCCAGAATTGAAGACACTGAAAAGGAAGGCTTCAGATACAACCCTAGATTTGGATCTGTCACTAAAACTAAACTCAAAGATTAATGATGCTGAAGAAGGAACATTAAAGAACCATGAAGTTGATAGCACAAACCTATCACTCTCATTGTGCTCTCAATCCTCATCCTCTAATAATCCTATCAGCAGGTTGATCAAGGAAGCACAACAAGATCGATGTGATGAACAAGGGAAAATGGCCAGTACTCTAGATCTGGCTATATGA 1032 0.3934 MEERHGSQCSKTNPSNIDEDEECESEANEEQSTQKNNGGSSSNSTVEENEKKIRPYVRSKMPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMFRSKKVDDRNQVFADYNNLVEIGDKNIYNISQLSMLQGYNPSQSSSFSYTNNYPCYGLGDASFGVYEKLLQRPFDWSNAISREGSSIFGEQSKIREPKDEFLSFGAHDSLSARARLSHVDHIPPINILQQRAQKNTMPINPTTNPPELKTLKRKASDTTLDLDLSLKLNSKINDAEEGTLKNHEVDSTNLSLSLCSQSSSSNNPISRLIKEAQQDRCDEQGKMASTLDLAI* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1049 343 PANTHER - 6 191 - -
Gso1g1049 343 PANTHER - 187 343 - -
Gso1g1049 343 MobiDBLite consensus disorder prediction 30 46 - -
Gso1g1049 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 187 343 IPR044848 GO:0003700
Gso1g1049 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 6 191 IPR044848 GO:0003700
Gso1g1049 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 62 117 IPR006447 GO:0003677
Gso1g1049 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 118 IPR017930 -
Gso1g1049 343 MobiDBLite consensus disorder prediction 1 54 - -
Gso1g1049 343 Pfam Myb-like DNA-binding domain 64 112 IPR001005 -
Gso1g1049 343 SUPERFAMILY Homeodomain-like 60 116 IPR009057 -
Gso1g1049 343 Gene3D - 61 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1049 Gso-Chr1 43234123 43236338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1049 26 119 G2-like Transcription Factor Family AT2G42660 63.830 2.94e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso1g1049 Myb_DNA-binding 8.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1049 - - gmx:102660246 628.246