Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1047 ATGGCCACTCCCACAGCATACCAAGAACACCTCCCTGCATCCCCCCACTGGCTAAACAAAGGGGACAACGCATGGCAGCTGACAGCAGCCACTCTCGTAGGTCTCCAAAGCATGCCGGGTCTGGTGATCCTCTACGCCAGCATGGTGAAGAAGAAATGGGCCGTGAACTCTGCATTCATGGCCCTCTACGCCTTTGCGGCGGTCCTAATATGCTGGGTGCTCGTTTGTCACCGAATGGCGTTCGGTGACAAACTGCTTCCCTTCTGGGGGAAGGGCGCCCCAGCACTAGGCCAGAAGTTTTTAACACACCGCGCCAAAGTCCCCGAAAGCACGCACTATTATAACAATGGTACGGTCGAAAGCGCGACTTCGGAACCGTTGTTTGCCACGGCTTCTCTTGTGTATTTTCAATTCACGTTTGCGGCTATCACGCTTATCTTGTTGGCGGGATCGGTGCTAGGAAGAATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGCTGATTTTTTCGTACACTGTTGGGGCGTTTAGTCTTTGGGGTGGTGGCTTTCTCTACCATTGGGGGGTTATTGATTACTCTGGTGGATATGTTATTCATCTTTCCTCTGGAATTGCTGGTTTCACTGCTGCTTACTGGGTTGGGCCAAGGTTGAAGAGTGACAGGGAGAGGTTCCCACCGAACAACGTATTGCTGATGCTTGCGGGTGCAGGGTTACTATGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCCAACATTGACTCTTCCATTGCTGTGCTCAACACTAACATTTGTGCTGCCACTAGCCTCCTTGTATGGACTTCTCTTGATGTAATCTTCTTCGGCAAGCCTTCGGTGATTGGTGCTGTTCAGGGCATGATGACTGGACTCGTTTGCATCACCCCAGGAGCAGGGCTTGTGCAATCTTGGGCGGCTATAGTGATGGGAATTCTATCAGGGAGCATTCCATGGGTGACCATGATGATCCTCCACAAGAAGTCAAGCCTTCTACAGAAGGTAGATGATACCTTAGGAGTGTTCCACACACACGCTGTGGCTGGCCTATTGGGTGGCCTCCTCACAGGTCTCTTAGCAGAACCTCAGCTTTGTAGGCTCATATTGCCAGTGACCAACTCAAGGGGTGCCTTCTATGGTGGCAGTGGTGGCATTCAACTTTTTAAGCAATTAGTGGCAGCATGTTTTATAGCTGGATGGAACTTGGTCTCGACCACACTGATTCTTCTGACCATACAGTTGTTCATACCCTTGAGGATGCCAACCGAGCAGCTCGAGATCGGCGACGATGCCATCCACGGCGAAGAAGCATATGCTCTTTGGGGTGATGGTGAAAAATATGACCCAACCAGGCATGGATCCTCAAGAGTGGAAAAAACTTCAGCTTCGCCCCGTGTTAATGTAACTGGAGCAAGGGGTGTGACCATAGATTTATGA 1467 0.5092 MATPTAYQEHLPASPHWLNKGDNAWQLTAATLVGLQSMPGLVILYASMVKKKWAVNSAFMALYAFAAVLICWVLVCHRMAFGDKLLPFWGKGAPALGQKFLTHRAKVPESTHYYNNGTVESATSEPLFATASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIDSSIAVLNTNICAATSLLVWTSLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPQLCRLILPVTNSRGAFYGGSGGIQLFKQLVAACFIAGWNLVSTTLILLTIQLFIPLRMPTEQLEIGDDAIHGEEAYALWGDGEKYDPTRHGSSRVEKTSASPRVNVTGARGVTIDL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1047 488 PANTHER AMMONIUM TRANSPORTER 1 485 - -
Gso1g1047 488 TIGRFAM amt: ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gso1g1047 488 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005887
Gso1g1047 488 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005887
Gso1g1047 488 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005887
Gso1g1047 488 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005887
Gso1g1047 488 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005887
Gso1g1047 488 SUPERFAMILY Ammonium transporter 17 430 - -
Gso1g1047 488 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Gso1g1047 488 Gene3D Ammonium transporter AmtB like domains 2 451 IPR029020 -
Gso1g1047 488 PANTHER AMMONIUM TRANSPORTER MEP2 1 485 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gso1g1047 488 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1047 Gso-Chr1 43030050 43037483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1047 131 488 Inorganic Solute Cotransporters AT2G38290 77.654 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1047 K03320 - gmx:100798599 977.622