Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1043 ATGGATCACCACACTCCTTCCACTAACCCTACCTTATCTCAATTCTCTTCTTCAAAATCAAACAAAAGTTTAAACAAAGAGAAAAAGGGTGGTGCCAGAAAATGCAAAGGAGTGAGGCTCTCCACTGACCAACAAAGCGTGGCGGCGAGAGAACGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTGCAGAGCATGGTCCCCGGTGGAAGCAAGATGGACACGGTGTCCATGCTGGAAGAGGCCATTCAGTATGTGAAGTTCCTCAAGACCCAGATTTGGCTTCACCAAACCATGATCAACTTCATGGACAATGATAATAACAATAATAATAACTATGAGTCTTCTTCTTCACTACCCTCACCTTTGTTACACCCTAATAGGGATAATTGCTATTATTTCCCTTCTGAACAGTTTTTTTCACCTCAGCCAAATGCAGTGTTTGATTATGATAACATGCAGGATTTGGCACAATGCAGCTTCCAAGGTGAAGACACGACCTACATTGATGCCTCTTTGAAATATTGGCCAGCGTGA 537 0.4339 MDHHTPSTNPTLSQFSSSKSNKSLNKEKKGGARKCKGVRLSTDQQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKFLKTQIWLHQTMINFMDNDNNNNNNYESSSSLPSPLLHPNRDNCYYFPSEQFFSPQPNAVFDYDNMQDLAQCSFQGEDTTYIDASLKYWPA* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1043 178 Gene3D - 40 98 IPR036638 GO:0046983
Gso1g1043 178 Pfam Helix-loop-helix DNA-binding domain 50 89 IPR011598 GO:0046983
Gso1g1043 178 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 19 165 - -
Gso1g1043 178 MobiDBLite consensus disorder prediction 1 52 - -
Gso1g1043 178 MobiDBLite consensus disorder prediction 1 21 - -
Gso1g1043 178 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 165 IPR045843 GO:0003700|GO:0006355
Gso1g1043 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 101 IPR036638 GO:0046983
Gso1g1043 178 MobiDBLite consensus disorder prediction 22 36 - -
Gso1g1043 178 SMART finulus 46 95 IPR011598 GO:0046983
Gso1g1043 178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Gso1g1043 178 CDD bHLH_AtIND_like 41 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1043 Gso-Chr1 42827826 42828362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1043 34 127 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.917 7.83e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g1043 HLH 4.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1043 - - gmx:102667489 327.02