Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1028 ATGGAAATGACTTCGACTCCCCGCACAGTCGAAGAGATCTTCAAGGACTACACCGCCCGCAGAACTGCCATCGTTCGCGCTCTCTCTCAAGATGTGGATGAATTCTACGGACTCTGCGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCAAACGAAACATGGGAGGTGACTTTGCCGGCAGAGGAAGTTCCACCAGAGCTTCCGGAGCCTGCACTCGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTCTCTGTGGCCTTCTATCTTGGAGCTCGTCTTAACCGCAACGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCTACTGTTTTTGAAGTTGTGACAGAGAGGAAGCCAGTAAAGGACAAGCCCACTGCAGATAGTGGAAGCAAGTCTAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAATTCGCAGATGAAGGTTATGAAGAGGAGGATGAGCACAGTGAAACCCTTTGTGGTAGCTGCGGCGGAAACTACAATGCCGATGAATTTTGGATTGGCTGTGATATATGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACTCCTGCAAAAGCTGAAAGCATAAAGCAATACAAATGTCCTTCGTGCAGCTTGAGGCGGGGCAGGCCCTAA 717 0.4881 MEMTSTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGYEEEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1028 238 MobiDBLite consensus disorder prediction 148 165 - -
Gso1g1028 238 SUPERFAMILY FYVE/PHD zinc finger 175 236 IPR011011 -
Gso1g1028 238 CDD PHD_AL_plant 184 234 IPR044104 -
Gso1g1028 238 ProSitePatterns Zinc finger PHD-type signature. 185 231 IPR019786 -
Gso1g1028 238 SMART PHD_3 184 232 IPR001965 -
Gso1g1028 238 ProSiteProfiles Zinc finger PHD-type profile. 182 234 IPR019787 -
Gso1g1028 238 Pfam PHD-finger 185 232 IPR019787 -
Gso1g1028 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 232 IPR013083 -
Gso1g1028 238 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Gso1g1028 238 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 3 237 - -
Gso1g1028 238 MobiDBLite consensus disorder prediction 137 175 - -
Gso1g1028 238 PANTHER CPG BINDING PROTEIN 3 237 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1028 Gso-Chr1 41804346 41807860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1028 4 237 Alfin-like Transcription Factor Family AT5G05610 76.271 2.11e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso1g1028 Alfin 7.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1028 - - gmx:100793126 479.174