Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1000 ATGATGGGTGTCTTCTCTGGATTTCCTCTTCTTTTCCTTCTTCCTTTTTGCTTTGCTTCCTTAGCTTTTGGAGCCACTTTGCCAGAAGACGAAGTGCAAGCTCTGAGAGACATAGCACACACAATTGGGAAGAAAAATTGGAACTACAGCGTAGATCCATGTACTGGAAAGAGTAATTGGAATTCTTCCGAAAAGAATGTCGTCACATGCAATTGTTCATTTGTTAATCACACTTGCCATGTTGTAAGCATCATCTTAAAAGAACAAAATCTTTCGGGTATTATCTCAACGGATCTGGTCAGATTACCTTATCTCCAACAAATTGACTTCACTCGGAACTACCTTAATGGTACAATTCCTAGGCAATTGGGAACCTTAAATCTCGTCAACATTTCCTTTATTGGAAACCGTCTAACTGGTCCAATCCCAAAGGAGCTTGGAAACATCACCACTCTCAAAATTTTAAAATTGGAGTTCAATCAGTTATCTGGAAGTCTTCCTCTAGAGCTTGGGAATCTTGCCCAGATTGAAAAACTGCATCTAACCTCCAACAATTTCAATGGAGAGTTACCTGCAACATTGGCTAGGCTCACAACATTGAAGGAACTTAGAATTGGCGACAATCAATTCTCTGGAGCAATACCCAATTTTATACAGAGCTGGATAAATCTTGAGAAACTTATCATGCATGGGAGTGGTTTGAGTGGGCCAATTCCTTCTGGAATTTCAATTCTGAGAAATCTTACTGACTTGAGGGTCACCGACTTGAATGGATCTGATTCACGGTTTCCACAACTTAATAATATGACAAACTTGTTAACACTAATATTCAGGAGTTGCAACATTATTGGATCCTTGCCAGAGAATCTTGTAAAATTGACTAATTTGGAAATATTAGATGTTAGCTACAACAAATTAACTGGACCAATTCCAAGCATTTTTGGTGATCTTCCGCACTTGAATATGCTTTTTTTAGAAGGGAATCATCTCACTGGATCGCTGCCTCGGTTGATAGATAGACCTCACTATGTAGATCTCTCATATAACAATCTTAGTATCGGCAACAACATAGAGGAGCTACAGTGTCAACCGGGAACTGTGAACTTGTTTGCTTCATTTTCTAATGGAAACAGCTTAGGAAATGTTTCATGTTTGTCAAACATTCCGTGTAAAACTTCATATTCTCTGCATATAAACTGTGGTGGAAATCTTGTAACTGATGGAAAGAAGACATATGATGATGACACGGGTGAGACTACTGGACCAGCAAGCTTTCATAATGACCGTGGAAAAAACTGGGCACTTATCAACAATGGTCATCTCTTTGATACCGACCGCGTAAACTACTATAATGTGACTAATTCAACTAAGCTTGTAATGGAGAATGTTGAACTGTACATGAATGCACGTGTTTCTCCTACATCTTTGACCTATTATGGATTTTGTTTGGGAAATGGAAACTACACAGTAAAACTCCATTTTGCAGAAATAATGTTTACTGATGATAAAACATATAGCAGTCTTGGAAGGCGTGTATTTGACATCTACATTCAGAGAAATTTGGTGGCTAAGGATTTCAATATTGCAAAAGAAGCAGGGGGTGTTGGTAAGGCAGTAATTAAAAATTTCACAGTTGTTGTGACTAGTAACGCCTTGGAGATTCGGTTATATTGGGCTGGGAAAGGAACCACTTCTATTCCATTTAGATCAGTTTATGGTCCTCTTATATCAGCTATATCTGTTGATCCTAACTTTATACCCCCATCAGAAAGTGGTAGTAGCAGCATATCCATAATAAGGGTTGTGGTTGCAGTTGTGGTTGCTGGAGCAATTATCATCTTGATATTTGGTATATTGTGGTGGAAGCGCTTTTTAGGATGGGAAAGATCAGTGGCCAGAGAACTGAAGGGTTTCGAATCACAAACTAGTTTATTTACCCTACGACAAATCAAGGCAGCAACAAATAACTTTGACAAATCCTTGAAGATTGGAGAAGGAGGGTTTGGTCTTGTTTACAAGGGTGTACTATCGGATGGCACTGTAGTAGCAGTTAAGCAGCTTTCTACTAGGTCAAGGCAAGGGAGTCGGGAATTTGTAAATGAGATAGGCCTGATTTCTGCTTTGCAACACCCTTGTTTAGTTAAGCTCTACGGCTGTTGTATGGAAGAGGATCAATTGCTACTGATTTATGAATACATGGAAAACAATAGTCTTGCTCATGCTTTATTTGCCAAAAATGATGAATCTGAGAAATGTCAATTGAGATTGGATTGGCAAACAAGGCATAGGATTTGTGTTGGTATCGCTAAAGGTTTGGCTTACCTTCATGAAGAGTCCAAACTGAAGATTGTTCATAGGGACATCAAGGCCAATAATGTGTTGCTGGATAAAGATCTCAACCCCAAGATATCTGATTTTGGATTGGCAAAGCTTAATGATGAGGACAAAACCCATTTGAGCACCAGAATAGCTGGCACTTATGGGTACATTGCTCCTGAGTATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCATTGGAAATTGTTAGTGGGATGAGCAACACCATTAGCCAGCCTACGGAAGAATGTTTCTCTCTCATTGATAGGGTACATCTCTTGAAAGAAAACGGTAATCTAATGGAGATTGTGGATAAGAGGTTGGGTGAACACTTCAACAAAACGGAGGCAATGATGATGATCAATGTAGCCCTTTTATGCACCAAAGTCTCTCTAGCACTCAGGCCCACCATGTCTTTAGTGGTAAGCATGCTTGAAGGGAGAACACGTATTCAAGAGGTGGTGTTAGACAAAAGAGAGGTATTGGATGATGACAAATTTGAGATAATGCAACAGTATTATCAACACAGAGGAGAAAATAACATAATTGAGTCTCAGAACCTAAGTTACCCTACGGGGGAATCTTCTAAACTTTTCGCTGATACAAGTTCTTCTGGTGAGCAAATTGAAAGTTAG 2997 0.3921 MMGVFSGFPLLFLLPFCFASLAFGATLPEDEVQALRDIAHTIGKKNWNYSVDPCTGKSNWNSSEKNVVTCNCSFVNHTCHVVSIILKEQNLSGIISTDLVRLPYLQQIDFTRNYLNGTIPRQLGTLNLVNISFIGNRLTGPIPKELGNITTLKILKLEFNQLSGSLPLELGNLAQIEKLHLTSNNFNGELPATLARLTTLKELRIGDNQFSGAIPNFIQSWINLEKLIMHGSGLSGPIPSGISILRNLTDLRVTDLNGSDSRFPQLNNMTNLLTLIFRSCNIIGSLPENLVKLTNLEILDVSYNKLTGPIPSIFGDLPHLNMLFLEGNHLTGSLPRLIDRPHYVDLSYNNLSIGNNIEELQCQPGTVNLFASFSNGNSLGNVSCLSNIPCKTSYSLHINCGGNLVTDGKKTYDDDTGETTGPASFHNDRGKNWALINNGHLFDTDRVNYYNVTNSTKLVMENVELYMNARVSPTSLTYYGFCLGNGNYTVKLHFAEIMFTDDKTYSSLGRRVFDIYIQRNLVAKDFNIAKEAGGVGKAVIKNFTVVVTSNALEIRLYWAGKGTTSIPFRSVYGPLISAISVDPNFIPPSESGSSSISIIRVVVAVVVAGAIIILIFGILWWKRFLGWERSVARELKGFESQTSLFTLRQIKAATNNFDKSLKIGEGGFGLVYKGVLSDGTVVAVKQLSTRSRQGSREFVNEIGLISALQHPCLVKLYGCCMEEDQLLLIYEYMENNSLAHALFAKNDESEKCQLRLDWQTRHRICVGIAKGLAYLHEESKLKIVHRDIKANNVLLDKDLNPKISDFGLAKLNDEDKTHLSTRIAGTYGYIAPEYAMHGYLTDKADVYSFGIVALEIVSGMSNTISQPTEECFSLIDRVHLLKENGNLMEIVDKRLGEHFNKTEAMMMINVALLCTKVSLALRPTMSLVVSMLEGRTRIQEVVLDKREVLDDDKFEIMQQYYQHRGENNIIESQNLSYPTGESSKLFADTSSSGEQIES* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1000 998 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 374 982 - -
Gso1g1000 998 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 284 338 - -
Gso1g1000 998 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 68 282 - -
Gso1g1000 998 CDD STKc_IRAK 663 934 - -
Gso1g1000 998 SUPERFAMILY Protein kinase-like (PK-like) 639 933 IPR011009 -
Gso1g1000 998 ProSitePatterns Protein kinases ATP-binding region signature. 663 685 IPR017441 GO:0005524
Gso1g1000 998 Gene3D Phosphorylase Kinase; domain 1 626 732 - -
Gso1g1000 998 ProSiteProfiles Protein kinase domain profile. 657 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1000 998 SUPERFAMILY L domain-like 71 351 - -
Gso1g1000 998 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 284 338 - -
Gso1g1000 998 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 374 982 - -
Gso1g1000 998 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 68 282 - -
Gso1g1000 998 Gene3D - 391 583 - -
Gso1g1000 998 Gene3D Ribonuclease Inhibitor 257 378 IPR032675 -
Gso1g1000 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Gso1g1000 998 Pfam Malectin domain 395 579 IPR021720 -
Gso1g1000 998 Gene3D Ribonuclease Inhibitor 28 256 IPR032675 -
Gso1g1000 998 SMART serkin_6 657 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1000 998 Pfam Protein tyrosine and serine/threonine kinase 661 887 IPR001245 GO:0004672|GO:0006468
Gso1g1000 998 Gene3D Transferase(Phosphotransferase) domain 1 733 955 - -
Gso1g1000 998 Pfam Leucine rich repeat 279 330 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1000 Gso-Chr1 40737283 40770616 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1000 21 966 Receptor kinase-like Gene Family AT1G53420 52.251 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso1g1000 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1000 - - gmx:100801071 1914.81