Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0998 ATGATGGGTGTCTTCTCTGGATTTCCTCTTCTTTTCCTTCTTCCTTTTTGCTTTGCTTCCTTAGCTTTTGGAGCCACTTTGCCAGAAGACGAAGTGCAAGCTCTGAGAGACATAGCACACACAATTGGGAAGAAAAATTGGAACTACAGCGTAGATCCATGTACTGGAAAGAGTAATTGGAATTCTTCCGAAAAAAATGTTGTCACATGCAATTGTTCATTTGTTAATCACACTTGCCATGTTGTAAGCATCATTTTAAAAGAACAAAATCTTTCGGGTATTATCTCAGCGGATCTGGTCAGATTACCCTATCTCCAACAAATTGACTTCACTCGGAACTACCTTAATGGTACAATTCCTAAGCAATTGGGAACCTTAAATCTCGTCAACATTTCCTTTCTTGGAAACCGTCTAACTGGTCCAATCCCAAAGGAGCTTGGAAACATCACCACTCTCAAAGCTTTAGTATTGGAGTTCAATCAGTTATCTGGAAGTCTTCCTCTAGAGCTTGGGAATCTTACCCAGATTGAAAAACTGCATCTAACCTCCAACAATTTCACTGGAGAGTTACCTGCAACATTGGCTAGGCTCACAATATTGAAGGAACTTAGAATTGGCGACAATCAATTCTCTGGAGCAATACCCAATTTTATACAGAGCTGGATAAATCTTGAGATACTGTGTGATTATACTTTTTTCTCCTTTTCTTTAATGAACTTTAGTTGTTTTAATTTTTTTAACGTAATGTCGCCTTATCCAAAACATATTTTTAGTGTTATGCAAGGGAGTGGTTTGAGTGGGCCAATTCCTTCTGGAATTTCAATTCTGAGAAATCTTACTGACTTGAGGGTCACTGACTTGAATGGATCTGATTCATGGTTTCCACAACTTAATAATATGACAAAGTTGGTAACACTAATATTGAGGAGTTGCAACATTATTGGATCCTTGCCAGAGAATCTTGGAAAATTGACTAATTTGGAAGTATTAGATGTTAGCTACAACAAATTAACTGGACCAATTCCAAGCATTTTTGGTGATCTTCGGCACTTGGATATGTTTTTTTTAGAAGGGAATCATCTCACTGGATCGCTGCCTCGGTTGATAGATAAACCTCACTATGTAGATCTCTCTTATAACAATCTTAGCATCGGCAACAACATAGAGGAGCTACAGTGTCGACAGGAAACTGTGAACTTGTTTGCTTCATTTTCTAATGGAAACAGCTTAGGAAATGTTTCATGTTTGTCAAACATTCCGTGTAAAACTTCATATTCTCTGTATATAAACTGTGGTGGAAATCTTGTAACTGATGGAAGGAAGACATATGATGATGACACGGGTGAGACTACTGGACCAGCAAGCTTTCATAACGACCGTGGAAAAAACTGGGCACTTATCAACAATGGTCATTTCTTTGATACCAACCGCTTAAACTACTATAATGTGACTAATTCGACTAAGCTTGTAATGGAGAATGTTGAACTGTACATGAATGCACGTGTTTCTCCGACCTCTTTGACCTATTATGGATTTTGCTTGGGAAATGGAATCTACACAGTAAAACTCCATTTTGCAGAAATAATGTTTACTGATGATAAAACATATAGCAGTCTTGGAAGGCGTGTATTTGACATCTACATTCAGAGAAATTTGGTGGCTAAGGATTTCAATATTGCAAAAGAAGCAGGGGGTGTTGGTAAGGCAGTAATTAAAAATTTCACAGTTGTTGTGACTAGTAACGCCTTGGAGATTCGGTTATATTGGGCTGGGAAAGGAACCACTTCTATTCCATTTAGATCAGTTTATGGTCCTCTTATATCAGCTATATCTGTTGATCCTAACTTTATACCCCCATCAGAAAGTGGTAGTAGCAGCATATCCATAATAAGGGTTGTGGTTGCAGTTGTGGTTGCTGGAGCAATTATCATCTTGATATTTGGTATATTGTGGTGGAAGCGCTTTTTAGGATGGGAAAGATCAGTGGGCAGAGAACTGAAGGGTTTAGAATCACAAACTAGTTTATTTACCCTACGACAAATCAAGGCAGCAACAAATAACTTTGACAAATCCTTGAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGTGTACTATCGGATGGCACTGTAGTAGCAGTTAAGCAGCTTTCTGCTAGGTCAAGGCAAGGGAGTCGGGAATTTGTAAATGAGATAGGCCTGATTTCTGCTTTGCAACACCCTTGTTTAGTTAAGCTCTACGGCTGTTGTATGGAAGAGGATCAATTGTTACTGATTTATGAATACATGGAAAACAATAGTCTTGCTCATGCTTTATTTGCCAAAAATGATGACTCTGAGAAATGTCAATTGAGATTGGATTGGCAAACAAGGCATAGGATTTGTGTTGGTATCGCTAAAGGTTTGGCTTACCTTCATGAAGAGTCCAAACTGAAGATTGTTCATAGGGACATCAAGGCCAATAATGTGTTGCTGGATAAAGATCTCAACCCCAAGATATCTGATTTTGGATTGGCAAAGCTTAATGATGGGGACAAAACCCATTTGAGCACCAGAATAGCTGGCACTTATGGGTACATTGCTCCTGAGTATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCATTGGAAATTGTTAGTGGGATGAGCAACACCATTAGCCAGCCTACGGAAGAATGTTTCTCTCTCATTGATAGGGTACATCTCTTGAAAGAAAACGGTAATCTAATGGAGATTGTGGATAAGAGGTTGGGTGAACACTTCAACAAAACGGAGGCAATGATGATGATCAATGTAGCCCTTTTATGTACCAAAGTCTCTCTAGCACTCAGGCCCACCATGTCTTTAGTGGTAAGCATGCTTGAAGGGAGAACACATATTCAAGAGGTGGTGTTAGACAAAAGAGAGGTATTGGATGATGTGAAATTTTAG 2958 0.3895 MMGVFSGFPLLFLLPFCFASLAFGATLPEDEVQALRDIAHTIGKKNWNYSVDPCTGKSNWNSSEKNVVTCNCSFVNHTCHVVSIILKEQNLSGIISADLVRLPYLQQIDFTRNYLNGTIPKQLGTLNLVNISFLGNRLTGPIPKELGNITTLKALVLEFNQLSGSLPLELGNLTQIEKLHLTSNNFTGELPATLARLTILKELRIGDNQFSGAIPNFIQSWINLEILCDYTFFSFSLMNFSCFNFFNVMSPYPKHIFSVMQGSGLSGPIPSGISILRNLTDLRVTDLNGSDSWFPQLNNMTKLVTLILRSCNIIGSLPENLGKLTNLEVLDVSYNKLTGPIPSIFGDLRHLDMFFLEGNHLTGSLPRLIDKPHYVDLSYNNLSIGNNIEELQCRQETVNLFASFSNGNSLGNVSCLSNIPCKTSYSLYINCGGNLVTDGRKTYDDDTGETTGPASFHNDRGKNWALINNGHFFDTNRLNYYNVTNSTKLVMENVELYMNARVSPTSLTYYGFCLGNGIYTVKLHFAEIMFTDDKTYSSLGRRVFDIYIQRNLVAKDFNIAKEAGGVGKAVIKNFTVVVTSNALEIRLYWAGKGTTSIPFRSVYGPLISAISVDPNFIPPSESGSSSISIIRVVVAVVVAGAIIILIFGILWWKRFLGWERSVGRELKGLESQTSLFTLRQIKAATNNFDKSLKIGEGGFGPVYKGVLSDGTVVAVKQLSARSRQGSREFVNEIGLISALQHPCLVKLYGCCMEEDQLLLIYEYMENNSLAHALFAKNDDSEKCQLRLDWQTRHRICVGIAKGLAYLHEESKLKIVHRDIKANNVLLDKDLNPKISDFGLAKLNDGDKTHLSTRIAGTYGYIAPEYAMHGYLTDKADVYSFGIVALEIVSGMSNTISQPTEECFSLIDRVHLLKENGNLMEIVDKRLGEHFNKTEAMMMINVALLCTKVSLALRPTMSLVVSMLEGRTHIQEVVLDKREVLDDVKF* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0998 985 Pfam Leucine rich repeat 302 361 IPR001611 GO:0005515
Gso1g0998 985 Gene3D Ribonuclease Inhibitor 28 252 IPR032675 -
Gso1g0998 985 Pfam Protein tyrosine and serine/threonine kinase 692 918 IPR001245 GO:0004672|GO:0006468
Gso1g0998 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Gso1g0998 985 SMART serkin_6 688 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0998 985 Gene3D Transferase(Phosphotransferase) domain 1 764 981 - -
Gso1g0998 985 Gene3D - 422 614 - -
Gso1g0998 985 Gene3D Phosphorylase Kinase; domain 1 658 763 - -
Gso1g0998 985 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 405 974 - -
Gso1g0998 985 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 68 227 - -
Gso1g0998 985 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 259 313 - -
Gso1g0998 985 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 315 369 - -
Gso1g0998 985 SUPERFAMILY L domain-like 52 227 - -
Gso1g0998 985 CDD STKc_IRAK 694 965 - -
Gso1g0998 985 Gene3D Ribonuclease Inhibitor 257 421 IPR032675 -
Gso1g0998 985 SUPERFAMILY Protein kinase-like (PK-like) 671 965 IPR011009 -
Gso1g0998 985 ProSiteProfiles Protein kinase domain profile. 688 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0998 985 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 405 974 - -
Gso1g0998 985 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 315 369 - -
Gso1g0998 985 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 259 313 - -
Gso1g0998 985 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 68 227 - -
Gso1g0998 985 Pfam Malectin domain 426 610 IPR021720 -
Gso1g0998 985 SUPERFAMILY L domain-like 260 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0998 Gso-Chr1 40682299 40705093 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0998 21 984 Receptor kinase-like Gene Family AT1G53420 51.240 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso1g0998 PK_Tyr_Ser-Thr 5.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0998 - - gmx:100800529 1904.41