Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso1g0980 | ATGAAGACTGCAAAGGGCAAGGGAGCAGCGAGGCCCTCAAAAGAATCACTGAAGCCTGTTGATGACCGAAAGGTTGGAAAGCGGAAGGCTTCTGGTAAGCCTGAGAAAAGCAGAGCACCAAAGAAGGAGAAGAAGGCCAAGAAAGACCCCAACAAGCCTAAAAGACCACCGAGTGCTTTCTTCGTGTTCCTTGAGGAGTTCAGGAAGACCTTTAAGGCTGAGAATCCTCTCGTGAAGGCTGTATCAGTTGTTGGAAAAGCTGGAGGAGAGAAATGGAAATCCCTGTCCAGTGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTTATCAAAGCTTATGAGAAAAAGCAGGCAAGCTCTGCAGATGATGATGAATCAGACAAGTCCAAATCTGAAGTGAATGATGAAGATGATGCCAGTGGAGAGGAGGACCACCAAGAGGACGAGGATGATGAGGAGGAAGAGGACGATGAAGATGATGACTGA | 510 | 0.4706 | MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSEVNDEDDASGEEDHQEDEDDEEEEDDEDDD* | 170 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso1g0980 | 169 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Gso1g0980 | 169 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 53 | 122 | IPR009071 | - | |
Gso1g0980 | 169 | MobiDBLite | consensus disorder prediction | 122 | 169 | - | - | |
Gso1g0980 | 169 | MobiDBLite | consensus disorder prediction | 8 | 54 | - | - | |
Gso1g0980 | 169 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 4-RELATED | 1 | 161 | IPR031061 | - | |
Gso1g0980 | 169 | Gene3D | High mobility group box domain | 23 | 139 | IPR036910 | - | |
Gso1g0980 | 169 | CDD | HMG-box | 53 | 119 | - | - | |
Gso1g0980 | 169 | MobiDBLite | consensus disorder prediction | 89 | 109 | - | - | |
Gso1g0980 | 169 | SUPERFAMILY | HMG-box | 44 | 125 | IPR036910 | - | |
Gso1g0980 | 169 | SMART | hmgende2 | 52 | 123 | IPR009071 | - | |
Gso1g0980 | 169 | Coils | Coil | 104 | 124 | - | - | |
Gso1g0980 | 169 | MobiDBLite | consensus disorder prediction | 122 | 143 | - | - | |
Gso1g0980 | 169 | MobiDBLite | consensus disorder prediction | 144 | 169 | - | - | |
Gso1g0980 | 169 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 1 | 1 | 161 | - | - | |
Gso1g0980 | 169 | Pfam | HMG (high mobility group) box | 53 | 122 | IPR009071 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso1g0980 | Gso-Chr1 | 39981510 | 39984730 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Gso1g0980 | HMG_box | 1e-22 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso1g0980 | K25507 | - | gmx:100305961 | 206.068 |