Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0979 ATGGCCACCGCAACAGCAGCAGCCACCTCGTCCTTCATGGGGACGCGCCTCCTGGAGGCCCATTCCGGGGCGGGGCGGGTGCAGGCCCGGTTCGGGTTTGGCAAGAAGAAAGCCGCCGCCCCGAAGAAAGTTTCCAGGGGGTCGGGCTCTAGCTCCGATAGGCCCCTGTGGTATCCGGGCGCCAAGGCGCCCGAGTACCTGGATGGGAGCCTTGTCGGAGACTACGGGTTCGACCCATTTGGGCTAGGGAAGCCCGCCGAGTACCTGCAGTTCGAGTTGGACTCGCTGGACCAGAACCTTGCGAAGAACGTGGCTGGGGACATCATTGGGACCAGGACCGAGCTCGCGGACGTGAAGTCCACGCCGTTCCAGCCCTACAGCGAGGTGTTCGGGCTGCAGAGGTTCCGCGAGTGCGAGCTCATTCACGGGAGGTGGGCCATGCTCGCCACTCTCGGAGCTCTCACTGTTGAGTGGCTCACTGGTGTTACATGGCAAGACGCCGGAAAGGTGGAGCTAGTGGAAGGTTCATCATACCTAGGGCAACCACTTCCATTCTCAATCACCACACTGATCTGGATCGAGGTTCTCGTAATTGGCTACATAGAGTTCCAGAGGAACGCAGAGCTGGACCCAGAAAAGAGGCTGTACCCAGGTGGCAGTTACTTCGACCCACTGGGCCTGGCCTCAGATCCAGAGAAGAAAGCCACCCTTCAATTGGCGGAGATCAAGCACGCCCGTCTCGCCATGGTGGGCTTCTTGGGCTTTGCAGTCCAAGCTGCCGCCACTGGCAAGGGCCCGCTCAACAACTGGGCCACCCACTTGAGTGACCCACTCCACACAACCATCATTGACACCTTCTCATCCTCCTCTTAA 873 0.6025 MATATAAATSSFMGTRLLEAHSGAGRVQARFGFGKKKAAAPKKVSRGSGSSSDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0979 290 Gene3D Chlorophyll a/b binding protein domain 57 290 - -
Gso1g0979 290 SUPERFAMILY Chlorophyll a-b binding protein 48 287 - -
Gso1g0979 290 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 289 IPR001344 GO:0009765|GO:0016020
Gso1g0979 290 Pfam Chlorophyll A-B binding protein 63 259 IPR022796 -
Gso1g0979 290 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 2 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0979 Gso-Chr1 39970516 39973059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0979 12 289 Chloroplast and Mitochondria Gene Families AT3G08940 85.305 2.45e-175 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0979 K08915 - gmx:100785180 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0979 1 39970516 39973059 Gso3g0495 3 9120117 9122174 GST