Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0973 ATGATGATTAATTTTCTCTCTCGTATGCAGATGGTTCATCCAATTTTGGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAGTTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTACATGTGGAATTGGAATTTGTGTCCCCTGAGAATGTCTCCGAGTGTATCCAATTGATTGATGAGGTCCGGCTGCTTCCTGAAGACCATAAAGCAAAAGTAGAAAAGCTAGAGGAGTTGATAACTTATCTGTTGTTGCTTATGATCACTCCATTCCATCTCATCTTGTTTTTCTGGAAAGCAAGAGGTTTGACTAGAGATGGGAGCCAAGCCCAATGGTTTGTAGATAGACAGGCAACATTTGAAGCAATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATTACGGGTTGGTGGTTGTGGCCAGAGCTATATCTGAGACGGCCTTTTGATAGCTTTTCTACCTCTCGGTTAGATTCATTACTAGAAGAAAAGGCTAACCAAGGGGTTCAAATCTATGTGCTTCTCTACAAGGAGGTTTCTCTAGCTTTAAAAATCAACAGCTTGTACAGTATGAGAAGACTGTTAAAAATTCATGAGAATGTGAGGGTATTATGCTATCTTGATCATTTCGCTGCTCGTGTGTATTTATGGTCACACCATGAAAAACTTGTGATTATTGATTACAAGATTTGCTATATCGGAGGATTAGATTTATGCTTTGGTTGA 810 0.3914 MMINFLSRMQMVHPILDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVSECIQLIDEVRLLPEDHKAKVEKLEELITYLLLLMITPFHLILFFWKARGLTRDGSQAQWFVDRQATFEAIATSIQDAKSEIFITGWWLWPELYLRRPFDSFSTSRLDSLLEEKANQGVQIYVLLYKEVSLALKINSLYSMRRLLKIHENVRVLCYLDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFG* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0973 269 PANTHER PHOSPHOLIPASE D ZETA 2 124 269 - -
Gso1g0973 269 SUPERFAMILY Clavaminate synthase-like 6 102 - -
Gso1g0973 269 Pfam Phospholipase D Active site motif 243 269 IPR001736 GO:0003824
Gso1g0973 269 Pfam JmjC domain, hydroxylase 7 72 IPR003347 -
Gso1g0973 269 Gene3D Cupin 4 98 - -
Gso1g0973 269 SUPERFAMILY Phospholipase D/nuclease 114 266 - -
Gso1g0973 269 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 243 269 IPR001736 GO:0003824
Gso1g0973 269 ProSiteProfiles JmjC domain profile. 1 89 IPR003347 -
Gso1g0973 269 PANTHER PHOSPHOLIPASE D 124 269 IPR015679 -
Gso1g0973 269 Gene3D Endonuclease Chain A 127 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0973 Gso-Chr1 39828369 39831053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0973 118 269 Phospholipase D Gene Family (Wang group) AT3G05630 67.105 1.72e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso1g0973 JmjC 1.9e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0973 K01115 - gsj:114405045 540.806